View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_32 (Length: 258)
Name: NF14944_low_32
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 17030276 - 17030044
Alignment:
| Q |
14 |
cccccaggtgcatctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttgaacatgtgatca |
113 |
Q |
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| T |
17030276 |
cccccaggtgcacctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttgaacatgtgatca |
17030177 |
T |
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| Q |
114 |
tactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggtaccggttataatggaatcaaaccattgcatgatcatgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17030176 |
tactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggtaccggttataatggaatcaaaccattgcatgatcatgt |
17030077 |
T |
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| Q |
214 |
ttggtcttgttcaaggacaaacctttacatatt |
246 |
Q |
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| T |
17030076 |
ttggtcttgttcaaggacaaacctttacatatt |
17030044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 17560712 - 17560480
Alignment:
| Q |
14 |
cccccaggtgcatctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttgaacatgtgatca |
113 |
Q |
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| T |
17560712 |
cccccaggtgcacctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttgaacatgtgatca |
17560613 |
T |
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| Q |
114 |
tactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggtaccggttataatggaatcaaaccattgcatgatcatgt |
213 |
Q |
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| T |
17560612 |
tactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggtaccggttataatggaatcaaaccattgcatgatcatgt |
17560513 |
T |
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| Q |
214 |
ttggtcttgttcaaggacaaacctttacatatt |
246 |
Q |
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| T |
17560512 |
ttggtcttgttcaaggacaaacctttacatatt |
17560480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 15004808 - 15004622
Alignment:
| Q |
2 |
atcctaacgctgcccccaggtgcatctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttg |
101 |
Q |
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| T |
15004808 |
atcctaacactacccccaggtgcacctattcgaatcactaagaatttacgcatctgtggagattttcatagtgccataacctatatatccatgattgttg |
15004709 |
T |
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| Q |
102 |
aacatgtgatcatactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggtaccggttataatgga |
190 |
Q |
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| T |
15004708 |
aacatgagatcatactcagagattcaagtcgctt--tcatcaattcaaaaatggatcttgctcgtgcaaagggtactggtgaaaatgga |
15004622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 15044600 - 15044414
Alignment:
| Q |
2 |
atcctaacgctgcccccaggtgcatctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttg |
101 |
Q |
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| T |
15044600 |
atcctaacactacccccaggtgcacctattcgaatcactaagaatttacgcatctgtggtgattgccatagtgccataacctatatatccatgattgttg |
15044501 |
T |
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| Q |
102 |
aacatgtgatcatactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggtaccggttataatgga |
190 |
Q |
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| T |
15044500 |
aacatgagatcatactcagagactcgagtcgattc--catcatttcaaaaatggatcttgctcgtgcaaagggtactggtgaaaatgga |
15044414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 15019358 - 15019186
Alignment:
| Q |
2 |
atcctaacgctgcccccaggtgcatctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttg |
101 |
Q |
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|||||||| || |||||||||||| ||||| ||||||||||||| |||||||| || || |||| |||||||||||| ||||||||||||||||||||| |
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| T |
15019358 |
atcctaacactacccccaggtgcacctattcgaatcactaagaatttacgcatctgtggtgattgccatagtgccatatcctacatatccatgattgttg |
15019259 |
T |
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| Q |
102 |
aacatgtgatcatactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggta |
176 |
Q |
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| T |
15019258 |
aacatgaggtcatactcagagactcaaggcgcttc--catcatttcaaaaatggatcttgctcgtgcaaagggta |
15019186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 15026476 - 15026304
Alignment:
| Q |
2 |
atcctaacgctgcccccaggtgcatctatttgaatcactaagaacttacgcatttgcggagattttcatagtgccataacctacatatccatgattgttg |
101 |
Q |
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|||||||| || |||||||||||| ||||| ||||||||||||| |||||||| || || |||| |||||||||||| ||||||||||||||||||||| |
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| T |
15026476 |
atcctaacactacccccaggtgcacctattcgaatcactaagaatttacgcatctgtggtgattgccatagtgccatatcctacatatccatgattgttg |
15026377 |
T |
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| Q |
102 |
aacatgtgatcatactaagagactcaagtcgcttccacatcaattcaagaacagatcctgctcgtgcaaagggta |
176 |
Q |
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|||||| | ||||||| ||||||||||| |||||| ||||| ||||| || |||| ||||||||||||||||| |
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| T |
15026376 |
aacatgaggtcatactcagagactcaaggcgcttc--catcatttcaaaaatggatcttgctcgtgcaaagggta |
15026304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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