View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14944_low_34 (Length: 253)
Name: NF14944_low_34
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33133129 - 33132915
Alignment:
| Q |
1 |
aaattacgaaacagctagctccaatgggtttaataaataataaagctcaatttcttaagatggaaacaatattctcttcgtgttttggaggtgtggttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33133129 |
aaattacgaaacagctagctccaatgggtttaataaataataaagctcaatttcttaagatggaaacaatattctcttcgtgttttggaggtggggttaa |
33133030 |
T |
|
| Q |
101 |
cccaattctcatcc--nnnnnnnnngttgccgatatcaatttcttatccttaataaggccaaaataacataatttgtatttgaccaacaatgtattgatt |
198 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33133029 |
cccaattctcatcctttttttttttgttgctgatatcaatttcttatccttaataaggccaaaataacataatttgtatttgaccaacaatgtattgatt |
33132930 |
T |
|
| Q |
199 |
aaagtgttaagagac |
213 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
33132929 |
taagtgataagagac |
33132915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University