View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_37 (Length: 241)
Name: NF14944_low_37
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_37 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 41706067 - 41706299
Alignment:
| Q |
9 |
gattattctataattatacctcaaatattgtaaccaaggttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccatttt |
108 |
Q |
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| T |
41706067 |
gattattctataattatacctcaaatattgtaaccaaagttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccatttt |
41706166 |
T |
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| Q |
109 |
gcagtgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgt |
208 |
Q |
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| T |
41706167 |
gcagtgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgt |
41706266 |
T |
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| Q |
209 |
aactcgatggagaagaacaattggctgtgaccc |
241 |
Q |
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| T |
41706267 |
aactcgatggagaagaacaattggctgtgaccc |
41706299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 41715878 - 41716102
Alignment:
| Q |
17 |
tataattatacctcaaatattgtaaccaaggttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccattttgcagtgat |
116 |
Q |
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| T |
41715878 |
tataataatacatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgat |
41715977 |
T |
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| Q |
117 |
cgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgtaactcgat |
216 |
Q |
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| T |
41715978 |
cgccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgag |
41716077 |
T |
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| Q |
217 |
ggagaagaacaattggctgtgaccc |
241 |
Q |
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| T |
41716078 |
ggagaagcacaatttgctgtgaccc |
41716102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 41656191 - 41656246
Alignment:
| Q |
127 |
ggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagctt |
182 |
Q |
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| T |
41656191 |
ggcttcacaatttcctcattcttttcatggtacaccctcaccctttcacaaagctt |
41656246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 2440948 - 2440818
Alignment:
| Q |
95 |
tttctatccattttgcagtgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatga |
194 |
Q |
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| T |
2440948 |
tttctatccatttcgcggtgattggcccagatggcttcacaatttcctcattcttttccgggtacaccctcacccattcacaaagcttgttgatcaatga |
2440849 |
T |
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| Q |
195 |
tgcatggttgatgtaactcgatggagaagaa |
225 |
Q |
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| T |
2440848 |
tgcatggctaatgtagctcgttggagaagaa |
2440818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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