View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_38 (Length: 238)
Name: NF14944_low_38
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 10233777 - 10233979
Alignment:
| Q |
17 |
aatatcactaagaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagt |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10233777 |
aatatcacaaagaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagt |
10233876 |
T |
|
| Q |
117 |
gtaactaaaccttatatctttcatagtgaaattgacttgaagttttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatct |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10233877 |
gtaactaaaccttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatct |
10233976 |
T |
|
| Q |
217 |
aca |
219 |
Q |
| |
|
||| |
|
|
| T |
10233977 |
aca |
10233979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 8336661 - 8336863
Alignment:
| Q |
17 |
aatatcactaagaatcataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336661 |
aatatcactaagaatcataacacgaaaggaatttaagttggttgaaaactgtaaggaaaaaattataaggtaataagtattgcaatatgataactaaagt |
8336760 |
T |
|
| Q |
117 |
gtaactaaaccttatatctttcatagtgaaattgacttgaagttttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8336761 |
gtaactaaaccttatatctttcatagtgaaattgacttgaagctttttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatct |
8336860 |
T |
|
| Q |
217 |
aca |
219 |
Q |
| |
|
||| |
|
|
| T |
8336861 |
aca |
8336863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 22080835 - 22080888
Alignment:
| Q |
163 |
ttcccttcatttagttgacagtaacccatgtcctgaacaactccaatgacatct |
216 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||| || | ||||||||||||| |
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|
| T |
22080835 |
ttcccttcattcaattgacagtagcccatgtcctggaccattccaatgacatct |
22080888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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