View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_4 (Length: 572)
Name: NF14944_low_4
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 561
Target Start/End: Complemental strand, 43796710 - 43796171
Alignment:
| Q |
16 |
cactaccaatacactttctacctcttctatctctcttctgccattttggcaaagataaatcaccatcatcttgatcttctttatgatattcagtgggagg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43796710 |
cactaccaatacactttctacctcttctatctctcttctgccattttggcaaagataaatcaccatcatcttgatcttctttatgatattcagtgggagg |
43796611 |
T |
|
| Q |
116 |
attaagtcctttaaaatctctattcgggtgagacctcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43796610 |
attaagtcctttaaaatctctattcgggtgagacctcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttc |
43796511 |
T |
|
| Q |
216 |
ttgatcggtttctttatgccaccaatttcttcttcatcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggcttcttacct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43796510 |
ttgatcggtttctttatgccaccaatttcttcttcatcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggctttttacct |
43796411 |
T |
|
| Q |
316 |
tttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccattgctaaaagtttttccacaaacattgcactg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| || | |
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| T |
43796410 |
tttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccgttgctaaaagtttttccacagatattacattc |
43796311 |
T |
|
| Q |
416 |
atgagtagattcttgaacagaagcctcatccttagcatcatcttcatcacttgatagagaacaagctgaccttttcgccctcttttctgactcttcatgg |
515 |
Q |
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| T |
43796310 |
gtg------ttctgggatagaaacctcatccttagcatcatcttcatcacttgatagagaactaaaagacctctttatcctcttttccgactcttcacag |
43796217 |
T |
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| Q |
516 |
gtattctcatgatcatgcttatgatctttatcaaaactagccctat |
561 |
Q |
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| T |
43796216 |
gtgttctcaaaaccatgcttactatctttatcaaaactagccctat |
43796171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 263 - 547
Target Start/End: Complemental strand, 43796187 - 43795900
Alignment:
| Q |
263 |
atcaaaactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaagtgagatctccgg |
362 |
Q |
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|||||||||||||||||||| | ||||||||||||| | |||| || |||||||||||| | ||||||| |||||||| ||||||||||||||||| ||| |
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| T |
43796187 |
atcaaaactagccctattataactaccttgtattgagagaggggtttttaccttttgtgaacgatgattaagtttctttttaagaaagtgagatctgcgg |
43796088 |
T |
|
| Q |
363 |
tggccacccaatgcttttccattgctaaaagtttttccacaaacattgcactgatgagtagattcttgaacagaagcctcatccttag---catcatctt |
459 |
Q |
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| T |
43796087 |
tgaccgcccaacgcttttccattgctaaaagtttttccacaaacattgcattgatgtgtagattcctgaatagaaacctcatccttagtatcatcttctt |
43795988 |
T |
|
| Q |
460 |
catcacttgatagagaacaagctgaccttttcgccctcttttctgactcttcatgggtattctcatgatcatgcttatgatctttatc |
547 |
Q |
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| T |
43795987 |
catcacttgatagtgaagaagaagaccttttcatcctcttttctgaatcttcgtagggtttctcgtaaccatgcttatgatctttatc |
43795900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 28847348 - 28847414
Alignment:
| Q |
151 |
tcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttctt |
217 |
Q |
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| T |
28847348 |
tcatgtgaccataaaaaacattcttgattggaaacttgttctcgcaaatataacaagtttgtttctt |
28847414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 28847477 - 28847559
Alignment:
| Q |
322 |
gatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgcttttccattgctaaaagtttttccacaa |
404 |
Q |
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| T |
28847477 |
gatgatgattacgcttcatcttgagaaagtgagatcttcggtgaccacctaatgtttttccattgctgaaagtcttaccacaa |
28847559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 29131089 - 29130956
Alignment:
| Q |
268 |
aactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggcc |
367 |
Q |
| |
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|||| ||| |||||||||| ||||||||| |||||| || |||||||| | || ||||| ||||| | |||||||||||||||||| ||||| || |
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| T |
29131089 |
aacttgccatattattattttattgtattgagaaaggggtttccaccttttgggaataatgatgaagtttatgcttaagaaagtgagatcttcggtgacc |
29130990 |
T |
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| Q |
368 |
acccaatgcttttccattgctaaaagtttttcca |
401 |
Q |
| |
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| |||||||||||| ||| |||| |||||||| |
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| T |
29130989 |
attcaatgcttttccgttgttaaatttttttcca |
29130956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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