View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_41 (Length: 211)
Name: NF14944_low_41
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_41 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 17779692 - 17779491
Alignment:
| Q |
10 |
tagattatacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttattgaataactagagggaacatcaataggacaaaatgaagtatccca |
109 |
Q |
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| T |
17779692 |
tagattctacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttgttgaataactagagggaacatcaataggacaaaatgaagtatccca |
17779593 |
T |
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| Q |
110 |
aagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatcaatacgaggcacattcacattaacattataaggtaccttaacc |
209 |
Q |
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| T |
17779592 |
aagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatcaatacgaggcacattcatattaacattataaggtaccttaacc |
17779493 |
T |
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| Q |
210 |
aa |
211 |
Q |
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|| |
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| T |
17779492 |
aa |
17779491 |
T |
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