View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_42 (Length: 208)
Name: NF14944_low_42
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 15755614 - 15755486
Alignment:
| Q |
59 |
ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggt |
158 |
Q |
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| T |
15755614 |
ttcaaatcatcaagaggagggattaggatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcgtttcatagaatgatgc----cgaggt |
15755519 |
T |
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| Q |
159 |
agttagaaccgtcaagaagaggcgtaactaaca |
191 |
Q |
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| T |
15755518 |
agttagaaccgtcaagaagaggtgtaactaaca |
15755486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 17118379 - 17118244
Alignment:
| Q |
58 |
gttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgagg |
157 |
Q |
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| T |
17118379 |
gttcaaatcatcaataggagggattggaattgatccatcaacaaaggaaagtttgttcttcgctcctaatgggcgcttcatagaacgatgccatgcgagg |
17118280 |
T |
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| Q |
158 |
tagttagaaccgtcaagaagaggcgtaactaacaca |
193 |
Q |
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| T |
17118279 |
tagttagaaccatcaagaagaggtgtaactatcaca |
17118244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 13139790 - 13139924
Alignment:
| Q |
59 |
ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggt |
158 |
Q |
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| T |
13139790 |
ttcaaatcatcagcaggagggattggaattgatccatcaacaaaatcaagtttgttcttcgctcccaactcacgcttcatagaacgatttcatgcgaggt |
13139889 |
T |
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| Q |
159 |
agttagaaccgtcaagaagaggcgtaactaacaca |
193 |
Q |
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| T |
13139890 |
agttggaaccatcaagaagaggcgtaactagcaca |
13139924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 26628758 - 26628696
Alignment:
| Q |
106 |
aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc |
168 |
Q |
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| T |
26628758 |
aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc |
26628696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 26734734 - 26734672
Alignment:
| Q |
106 |
aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc |
168 |
Q |
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| T |
26734734 |
aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc |
26734672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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