View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_5 (Length: 556)
Name: NF14944_low_5
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 546
Target Start/End: Complemental strand, 6170618 - 6170093
Alignment:
| Q |
20 |
aagctgtcacaacttgtgtctgaactcccaacaacttaactaagtttgtgtttgttttggcgtttcaccacacgtttgatagctttggaaattgataata |
119 |
Q |
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| T |
6170618 |
aagctgtcacaacttgtgtctgaactcccaacaacttaactaagtttgtgtttgttttggcgtttcaccacatgtttgatagctttggaaattgataata |
6170519 |
T |
|
| Q |
120 |
gagaagctacaaattgtaggacacaacaaatccactatcaaataacaatacaaacataagctaataaaataggaacacattaaaaaatatccacatcaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170518 |
gagaagctacaaattgtaggacacaacaaatccactatcaaataacaatacaaacataggctaataaaataggaacacattaaaaaatatccacatcaat |
6170419 |
T |
|
| Q |
220 |
tttttatcaatggaatcaattttatgtcatcctggaaccaattctatatctcataaattaattttaatctttgatcctattcgaagaaacaaatcaatta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170418 |
tttttatcaatggaatcaattttatgtcatcctggaaccaattctatatctcataaattaattttaatctttgatcctattcgaagaaacaaatcaatta |
6170319 |
T |
|
| Q |
320 |
agatcaatttcattacaaatgaagnnnnnnngataattactccctttgtccttgattataaacacctatcatgtttttattttctattcaaatatactcc |
419 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170318 |
agatcaatttcattacaaatgaagaaaaaaagataattactccctttgtccttgattataaacacctatcatgtttttattttctattcaaatatactcc |
6170219 |
T |
|
| Q |
420 |
ctaccaaattaattataaacacagacaatttgataaattgtttcaattagcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagatat |
519 |
Q |
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| T |
6170218 |
ctaccaaattaattataaacacagacaatttgataaattgtttcaattagcaatgtta-tcaaaatgattaagttcgaagtggtaactgccaaaagatat |
6170120 |
T |
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| Q |
520 |
cgatctttgagattgttgttggtgatg |
546 |
Q |
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| T |
6170119 |
cgatctttgagattgttgttggtgatg |
6170093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 546
Target Start/End: Complemental strand, 6187142 - 6187039
Alignment:
| Q |
444 |
acaatttgataaattgtttcaa-ttagcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagatatcgatctttgagattgttgttggt |
542 |
Q |
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||||||||||||||||| |||| ||||||||| ||||||| ||||| |||||||||||| || | |||| |||| || ||||| |||||||||||| |
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| T |
6187142 |
acaatttgataaattgtctcaagttagcaatgacattcaaattgatttggttcgaagtggtcgtcggctaaaggtatctatatttgatattgttgttggt |
6187043 |
T |
|
| Q |
543 |
gatg |
546 |
Q |
| |
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|||| |
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| T |
6187042 |
gatg |
6187039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 47336553 - 47336509
Alignment:
| Q |
93 |
gtttgatagctttggaaattgataatagagaagctacaaattgta |
137 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
47336553 |
gtttgagagccttggaaattgataatagagaagctacaaattgta |
47336509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 22179225 - 22179177
Alignment:
| Q |
92 |
cgtttgatagctttggaaattgataatagagaagctacaaattgtagga |
140 |
Q |
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| T |
22179225 |
cgtttgagagccttgagaattgataatagagaagccacaaattgtagga |
22179177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 546
Target Start/End: Complemental strand, 4244086 - 4243983
Alignment:
| Q |
444 |
acaatttgataaattgtttcaatt-agcaatgttattcaaaatgattaagttcgaagtggtaaccgccaaaagatatcgatctttgagattgttgttggt |
542 |
Q |
| |
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||||||||||||||||| |||| | ||||||| |||||||| ||||| ||||| ||||| ||| |||||| |||| || || || |||||||||||| |
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| T |
4244086 |
acaatttgataaattgtctcaagtgagcaatgatattcaaattgatttggttcgtagtgggcgccgacaaaaggtatcaatattcgatattgttgttggt |
4243987 |
T |
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| Q |
543 |
gatg |
546 |
Q |
| |
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|||| |
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|
| T |
4243986 |
gatg |
4243983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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