View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14944_low_6 (Length: 547)
Name: NF14944_low_6
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 30498262 - 30498794
Alignment:
| Q |
1 |
cacagaggaagaaagaaagaaagggatggccaacaccttcatagcatcaagacataattttgttccttgagtaagtttcaagacatattcattattattc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30498262 |
cacaaaggaagaaagaaagaaagggatggccaacaccttcatagcatcaagacataattttgttccttgagtaagtttcaagacatattcattattattc |
30498361 |
T |
|
| Q |
101 |
tttctacaaatttcacaagtctcttcattcaaaaacaataactccatcatggaaaatcatcctcctagatgcaagtacacagtgatcttcttcttcatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30498362 |
tttctacaaatttcacaagtctcttcattcaaaaacaataactccatcatggaaaatcatcctcctagatgcaagtacacagtgatcttcttcttcatta |
30498461 |
T |
|
| Q |
201 |
tagtttctctcttccttggcttaatctccttcatcttgtgtatagctgctgagataaagaggaataaggttaggtactgctcatcctcttc-ttgtttac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
30498462 |
tagtttctctcttccttggcttaatctccttcatcttgtgtatagctgctgagataaagaggaataaggttaggtactgctcattctcttctttgtttac |
30498561 |
T |
|
| Q |
300 |
ttgaactttgatgatcctcaaaggttttctatttttgcttttatatgaaaaatagcacgacacttctgatcgagtgtgtttctgatgtccgacatcgaca |
399 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30498562 |
ttgaattttaatgatcctcaaaggttttctatttttgcttttatatgaaaaatagtacgacacttctgatcgagtgtgtttctgatgtccgacatcgaca |
30498661 |
T |
|
| Q |
400 |
tatgtgattatattaaattgattgattttttcaaattattaccagtctcgacgtatcagcgtcgtattcagtgtttgtgattgtagcagtgcttcatatg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30498662 |
tatgtgattatattaaattgattgattttctcaaattattaccagtcttgacgtatcagcgtcgtgttcagtgtttgtgattgtagcagtgcttcatatg |
30498761 |
T |
|
| Q |
500 |
aaaaatgtgtccaatgcttaatttggttatttt |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30498762 |
aaaaatgtgtccaatgcttaatttggttatttt |
30498794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 3148209 - 3148159
Alignment:
| Q |
389 |
cgacatcgacatatgtgattatattaaattgattgattttttcaaattatt |
439 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
3148209 |
cgacaccgacacatgtgattatattaaattaatttattttctcaaattatt |
3148159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University