View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_7 (Length: 537)
Name: NF14944_low_7
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 2 - 525
Target Start/End: Complemental strand, 14220419 - 14219896
Alignment:
| Q |
2 |
attgattatttgtgtgtccggtgatcgttagtgtatgatatgcaatatgcagtacgattggagtcagataagttttgcatcatgagggggcgaagcattt |
101 |
Q |
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|||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14220419 |
attgattatttgagtgtctggtgttcgctagtgtatgatatgcaatatgcagtacgattggagtcagataagttttgcatcatgagggggcgaagcattt |
14220320 |
T |
|
| Q |
102 |
tggaggtatctttgagggtggcagtgttttttagcgtcgagctaaagtgatttggtggattgttgaattgttcgatgtggggggttttttattatctggt |
201 |
Q |
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||||||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
14220319 |
tggaggtctcattgagggtggcagagttttttagcgtcgagtcaaagtgatttggtggattgttgaattgttcaatgtggtgggttttttattatctggt |
14220220 |
T |
|
| Q |
202 |
atagtcttgtcgctgacagtatcttcggatcaggagtggtagcacttctgatggtttgctgatgggggtgtttattggggatattattatgtagcatctc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14220219 |
atagtcttgtcgctgacagtatcttcggatcaggagtggtagcacttctgatggtttgctgatgggggtgtttattggggatattattatgtagcatctc |
14220120 |
T |
|
| Q |
302 |
tcagtctagctagggagtattcgagtaacgtggatcggtatgttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatg |
401 |
Q |
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| T |
14220119 |
tcagtctagctagggagtattcgagtaacgtggatcggtatgttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatg |
14220020 |
T |
|
| Q |
402 |
taatcaaattaactcagcaatgagctcatcgtcggaggcttgcataagatctcagtttaatgcatctgttgatagttagcaggttagtcaatgtttagat |
501 |
Q |
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| T |
14220019 |
taatcaaattaactcagcaatgagctcatcgtcggaggcttgcataagatctcagtttaatgcatctgttgataattagcaggttagtccatgtttagat |
14219920 |
T |
|
| Q |
502 |
cgcttgcagttgctggaaggtgat |
525 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
14219919 |
cgcttgcagttgctggaaggtgat |
14219896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 242 - 415
Target Start/End: Complemental strand, 14230240 - 14230071
Alignment:
| Q |
242 |
agcacttctgatggtttgctgatggg-ggtgtttattggggatattattatgtagcatctctcagtctagctagggagtattcgagtaacgtggatcggt |
340 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||| ||||||||||||||||| ||||||| || |
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| T |
14230240 |
agcagttctgatggtttgctgatgcaaggtgtttattggggatat------ggagcatcagtcagtctagacagggagtattcgagtaatgtggatcagt |
14230147 |
T |
|
| Q |
341 |
a-tgttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatgtaatcaaattaact |
415 |
Q |
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| T |
14230146 |
aatttttttttatcaaaggaaaggaactcatgtcagcaaatgttacatggtcacctgatatgtaatcaaattaact |
14230071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 14229989 - 14229894
Alignment:
| Q |
430 |
tcgtcggaggcttgcataagatctcagtttaatgcatctgttgatagttagcaggttagtcaatgtttagatcgcttgcagttgctggaaggtgat |
525 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||| ||||| ||||||| |||||||| |||| |
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| T |
14229989 |
tcgtcggaggattgcataagatctcagtttaatgaatctgttgatagtaagtaggttagtcaaagttttgatcgtttgcagtagctggaagttgat |
14229894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 14230455 - 14230346
Alignment:
| Q |
60 |
tggagtcagataagttttgcatcatgagggggcgaagcattttggaggtatctttgagggtggcagtgttttttagcgtcgagctaaagtgatttggtgg |
159 |
Q |
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|||||| |||| ||||||||||||||| || |||||||||||||||| || | ||| |||||| || |||||| || || ||||||||||||||| |
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| T |
14230455 |
tggagtaagatcagttttgcatcatgaaacggtgaagcattttggaggtctcatcaaggatggcagagtattttagggttgaatcaaagtgatttggtgg |
14230356 |
T |
|
| Q |
160 |
attgttgaat |
169 |
Q |
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|||||||||| |
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| T |
14230355 |
attgttgaat |
14230346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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