View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14944_low_9 (Length: 491)
Name: NF14944_low_9
Description: NF14944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14944_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 472
Target Start/End: Complemental strand, 1390956 - 1390495
Alignment:
| Q |
11 |
agcataggtgcagtttagcactttaagattacataacctcatagactacttgctccacagttaagattaagaaacaatcaaatttacgatataaaaagaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1390956 |
agcataggtgcagtttagcactttaagattacataacctcatagactacttgctccacagttaagattaagaaacaaacaaatttacgatataaaaagaa |
1390857 |
T |
|
| Q |
111 |
tagagaatactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagcaaacacggaagaaa |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390856 |
tagataatactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagcaaacacggaagaaa |
1390757 |
T |
|
| Q |
211 |
cactggagacatttcctttaaaaagaaaaggaaattacaaacagaacaaatggagagnnnnnnnntgttcctccaatggcagatagtaaactctcaaatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1390756 |
cactggagacatttcctttaaaaagaaaaggaaattacaaacagaacaaatggagagaaaaaaaatgttcctccaatggcagatagtaaactctcaaatt |
1390657 |
T |
|
| Q |
311 |
tagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390656 |
tagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaa |
1390557 |
T |
|
| Q |
411 |
caacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
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| T |
1390556 |
caacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
1390495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 101 - 472
Target Start/End: Complemental strand, 1374572 - 1374194
Alignment:
| Q |
101 |
ataaaaagaatagagaatactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagcaaac |
200 |
Q |
| |
|
||||||| |||||| |||| |||||||||||| |||| |||| |||||||||| || |||||||||||||| |||||||||| |||||||||||| || |
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| T |
1374572 |
ataaaaacaatagataatattaatttgagaatcaatagaagtgccatttcatttatcaactcttatccatccatttgcattttaaaatccgaaaggtaaa |
1374473 |
T |
|
| Q |
201 |
acggaagaaacactgga-gacatttcctttaaaaag-aaaaggaaattacaaacagaacaaatggagagnnnnnnnntgttcctccaatggcag---ata |
295 |
Q |
| |
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|| ||| |||||| | | ||||||||||| ||||| |||||||||||||||||||||||||| ||| | |||||||||||||| || | | |
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| T |
1374472 |
actgaa-aaacacagtacgacatttccttaaaaaaataaaaggaaattacaaacagaacaaatagagcgaaaaaaa-tgttcctccaatggtagccaaga |
1374375 |
T |
|
| Q |
296 |
gtaa----actctcaaatttagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaag |
391 |
Q |
| |
|
|| | || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374374 |
gtgatttaacactcaaatttagtaaacttcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaag |
1374275 |
T |
|
| Q |
392 |
gcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374274 |
gcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
1374194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 303 - 472
Target Start/End: Complemental strand, 1358811 - 1358642
Alignment:
| Q |
303 |
ctcaaatttagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggta |
402 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358811 |
ctcaaacttagtaaacttcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggta |
1358712 |
T |
|
| Q |
403 |
agcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358711 |
agcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
1358642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 303 - 472
Target Start/End: Complemental strand, 1350905 - 1350736
Alignment:
| Q |
303 |
ctcaaatttagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggta |
402 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350905 |
ctcaaatttagtagaccgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggta |
1350806 |
T |
|
| Q |
403 |
agcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1350805 |
agcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
1350736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 310 - 472
Target Start/End: Complemental strand, 1394903 - 1394741
Alignment:
| Q |
310 |
ttagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaaca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1394903 |
ttagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaactttgtcgaatccgatgatacggacaaaggcattagggtaagcatca |
1394804 |
T |
|
| Q |
410 |
acaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1394803 |
acaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
1394741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 321 - 472
Target Start/End: Complemental strand, 1384541 - 1384390
Alignment:
| Q |
321 |
caggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1384541 |
caggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatc |
1384442 |
T |
|
| Q |
421 |
aagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1384441 |
aagctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
1384390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 1358946 - 1358869
Alignment:
| Q |
118 |
tactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagc |
196 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
1358946 |
tactaatttcagaatgaataaaagtaccatttcatttattaactcttatccatacatttgcattt-gaaatccgaaagc |
1358869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 1351072 - 1350995
Alignment:
| Q |
118 |
tactaatttgagaatgaataaaagtaccatttcattaattaactcttatccatctatttgcatttcaaaatccgaaagc |
196 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
1351072 |
tactaacttgagaatgaa-aaaggtaccatttcatttattaactcttatccatacatttgcattttgaaatccgaaagc |
1350995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 472
Target Start/End: Complemental strand, 7010534 - 7010385
Alignment:
| Q |
323 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
422 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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|
| T |
7010534 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
7010435 |
T |
|
| Q |
423 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
7010434 |
gctccttcaacacttgagaagaatcagtggctccaaacaaaggcaacttc |
7010385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 472
Target Start/End: Complemental strand, 7007456 - 7007307
Alignment:
| Q |
323 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
422 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
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| T |
7007456 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
7007357 |
T |
|
| Q |
423 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttc |
472 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||||||| |
|
|
| T |
7007356 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttc |
7007307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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