View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14945_high_1 (Length: 650)

Name: NF14945_high_1
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14945_high_1
NF14945_high_1
[»] chr4 (1 HSPs)
chr4 (14-633)||(42550798-42551422)


Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 14 - 633
Target Start/End: Complemental strand, 42551422 - 42550798
Alignment:
Q  14 aatatataaatgttgcttatatctaaacttctgcaccatacaa-cttttctccatagttcatcaattttcttatgagtgtattctcttgaaatattcata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551422 aatatataaatgttgcttatatctaaacttctgcaccatacactcttttctccatagttcatcaattttcttatgagtgtattctcttgaaatattcata 42551323  T
Q  113 tagcaaagctacttt----gttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatatacctca 208  Q
    ||||||| |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551322 tagcaaatctactttaattgttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatatacctca 42551223  T
Q  209 aagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcattcccacgaagacaatgctgcaccaccg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551222 aagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcattcccacgaagacaatgctgcaccaccg 42551123  T
Q  309 ttggattccaacacaagaagagcaacggtacttcactccctcgacgacgcgtaagggctctccagagagcttctgaagcagtaaaaactgcaataaagtc 408  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  42551122 ttggattccaacacaagaagaacaacggtacttcactccctcgtcgacgcgtaagggctctccagagagcttctgaagcagtaataactgccataaagtc 42551023  T
Q  409 attgtcctcacaaaagagtgctaaaacaaagaaagcttccactggtgttctttctaggagcttctcaaggaagctgttaagtcggagattctggagaaaa 508  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42551022 attgtcctcacaaaagagtgctaaaacaaagaaaacttccactggtgttctttctaggagcttctcaaggaagctgttaagtcggagattctggagaaaa 42550923  T
Q  509 gcagtgaaggaagagggaagtgaaggtgtattgaggtgtaagagatctttccgggaactacttatgcaggaacgagattataaaccaacgtcgtttagcg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42550922 gcagtgaaggaagagggaagtgaaggtgtattgaggtgtaagagatctttccgggaactacttatgcaggaacgagattataaaccaacgtcgtttagcg 42550823  T
Q  609 aagatgccatattcagtgccaaaag 633  Q
    |||||||||||||||||||||||||    
T  42550822 aagatgccatattcagtgccaaaag 42550798  T

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