View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14945_high_16 (Length: 293)

Name: NF14945_high_16
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14945_high_16
NF14945_high_16
[»] chr7 (20 HSPs)
chr7 (1-278)||(26226639-26226916)
chr7 (1-278)||(26207104-26207381)
chr7 (1-240)||(26259568-26259807)
chr7 (2-89)||(26297115-26297202)
chr7 (7-241)||(19103785-19104019)
chr7 (1-211)||(26128236-26128446)
chr7 (1-239)||(26203563-26203801)
chr7 (1-241)||(26301480-26301720)
chr7 (2-89)||(26250515-26250602)
chr7 (1-211)||(26190934-26191144)
chr7 (1-77)||(26154872-26154948)
chr7 (7-71)||(26242072-26242136)
chr7 (1-89)||(26223201-26223289)
chr7 (1-211)||(26178752-26178962)
chr7 (1-89)||(26082399-26082487)
chr7 (1-89)||(26106186-26106274)
chr7 (1-68)||(26184941-26185008)
chr7 (160-240)||(26155031-26155111)
chr7 (155-211)||(26240110-26240166)
chr7 (173-241)||(26297286-26297354)
[»] chr4 (1 HSPs)
chr4 (25-80)||(44902934-44902989)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 26226639 - 26226916
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
26226639 cctggtcatatgaaccctatgattgacacagcaaggctatttgcaaagcatggtgttgatgttaccatcatcactacacaagcaaatgccttgttattca 26226738  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26226739 agaaacccatcgacaacgacttgttttctggatattccatcaaagcttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 26226838  T
201 catcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagat 278  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26226839 catcaaagatgccacttcccgtgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagat 26226916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 26207104 - 26207381
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
26207104 cctggccatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgttaccatcatcactacacaagcaaatgccttgttattca 26207203  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
26207204 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctggagcccaagtaggtctcccagatggtgttgaaaa 26207303  T
201 catcaaagatgccacttcccatgaaatgcttggtaaaatcatgcttggaattgcgaagatccaagatcaaattgagat 278  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
26207304 catcaaagatgccacttcccgtgaaatgcttggtaaaatcatgcttggaattgcgaacatccatgatcaaattgagat 26207381  T

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Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26259568 - 26259807
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| || ||||||||||||||||    
26259568 cctggccatatgaaccctatgattgacacagcaagactatttgcaaagcatggtattaatgttaccattatcactacacatgccaatgccttgttattca 26259667  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    ||||||| ||||||||||||   | ||  || |||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||| ||||| |||||    
26259668 agaaagctatcgacaacgacacctgttgcggttattccatcagaacttgtgtcattcaattcccttcagcacaagttggtcttccagaaggtgtcgaaaa 26259767  T
201 catcaaagatgccacttcccatgaaatgcttggtaaaatc 240  Q
    |||||||||||  ||||||   ||||||||||||||||||    
26259768 catcaaagatggaacttccttagaaatgcttggtaaaatc 26259807  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 26297115 - 26297202
Alignment:
2 ctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||||    
26297115 ctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttgatgtaaccatcatcactacacatgccaatgc 26297202  T

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Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 19104019 - 19103785
Alignment:
7 catatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattcaagaaag 106  Q
    |||||||  |||||||| |||||||||||||||||||| || |||||||||||||| || |||||  |||| || || ||||| |    |||| | |||     
19104019 catatgattcctatgatagacacagcaagactatttgccaaacatggtgttaatgttacaatcattgctactcatgccaatgcttccacattccaaaaat 19103920  T
107 ccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaacatcaa 206  Q
    |||| ||||  |||||   ||| ||||| ||||||||||||    | ||||  |||||| |||| |||||||||||||||||||||||||||||||||||    
19103919 ccatagacagtgacttcaattcaggatactccatcaaaactcaacttattcccttcccttcagctcaagttggtcttccagatggtgttgaaaacatcaa 19103820  T
207 agatgccacttcccatgaaatgcttggtaaaatca 241  Q
    |||||  ||||| | ||||||||||||||||||||    
19103819 agatggaacttcacttgaaatgcttggtaaaatca 19103785  T

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Target: chr7; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26128236 - 26128446
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| || |||||||    ||||     
26128236 cctggccatatgaatcctatgattgacacagcaagactatttgccatgcatggtgttaatgttaccatcatcactacacatgctaatgcctcaacattcc 26128335  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    | |||||||| ||||  |||     ||  ||||| ||||| ||||||    | ||||| |||||| |||| ||||||||||| || ||||||||||||||    
26128336 aaaaagccatagacagtgacaccagtttaggatactccattaaaactcaacttattcagttcccttcagctcaagttggtctccctgatggtgttgaaaa 26128435  T
201 catcaaagatg 211  Q
    ||| |||||||    
26128436 catgaaagatg 26128446  T

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Target: chr7; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26203563 - 26203801
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    ||||| |||||||  |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || ||||| |     |||     
26203563 cctggccatatgattcctatgatagacacagcaagactatttgccaaacatggtgttaatgttaccatcatcactacacatgctaatgcttcaaccttcc 26203662  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    | ||||| || ||||  |||||   ||| ||||| |||||||| |||  | | ||||| |||||| |||| |||||| ||||||||||||||||||||||    
26203663 aaaaagcgatagacagtgacttcaattcaggatactccatcaagactcatcttattcagttcccttcagctcaagtttgtcttccagatggtgttgaaaa 26203762  T
201 catcaaagatgccacttcccatgaaatgcttggtaaaat 239  Q
      |||||||||  ||||||   ||||| |||||||||||    
26203763 tctcaaagatggaacttcctcagaaattcttggtaaaat 26203801  T

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Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26301480 - 26301720
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    |||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || ||||| |    ||||     
26301480 cctggtcatatgaatcctatgatagacacagcaagactatttgccaaacatggtgttaatgttaccatcatcactacacatgccaatgcttcaacattcc 26301579  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    | ||| | || ||| | |||||   ||| |||||  | || ||||||    | ||||| |||||| |||| ||||||||||| || ||||||||||||||    
26301580 aaaaatctatagacgatgacttcaattcaggataccctattaaaactcaacttattcagttcccttcagctcaagttggtctccctgatggtgttgaaaa 26301679  T
201 catcaaagatgccacttcccatgaaatgcttggtaaaatca 241  Q
    | |||| ||||  ||||| | |||||| |||||||||||||    
26301680 cttcaatgatggaacttcacttgaaatacttggtaaaatca 26301720  T

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Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 26250515 - 26250602
Alignment:
2 ctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgc 89  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||    
26250515 ctggtcatatgaaccctatgattgacactgcaagactatttgctaaacatggtgttaatgttaccatcatcactacacatgctaatgc 26250602  T

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Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26190934 - 26191144
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    ||||| |||||||  |||||||||||||| ||||||||||| || || |||||||||||||| |||||||| |||||||| || ||||| |    ||||     
26190934 cctggccatatgattcctatgattgacactgcaagactattagccaaacatggtgttaatgtaaccatcattactacacatgccaatgcttcaacattcc 26191033  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    | ||| |||| ||||  |||||   ||  ||||| ||||||||||||  | | ||| |||||||| |||| |||||||||||||||||||||||||||||    
26191034 aaaaaaccatagacagtgacttcagtttaggatactccatcaaaactcatcttattgaattcccttcagctcaagttggtcttccagatggtgttgaaaa 26191133  T
201 catcaaagatg 211  Q
      |||||||||    
26191134 tctcaaagatg 26191144  T

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Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26154872 - 26154948
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactac 77  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
26154872 cctggccatatgaatcctatgattgacacagctagactatttgcaaagcatggtgttaatgtgaccatcatcactac 26154948  T

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Target: chr7; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 26242072 - 26242136
Alignment:
7 catatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcat 71  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
26242072 catatgaaccctatgattgacactgcaagactatttgcaaagcatggtgttaatgttaccatcat 26242136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26223201 - 26223289
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgc 89  Q
    |||||||||||||   | |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||    
26223201 cctggtcatatgatttcaatgattgacacagcaagactatttgccaaacatggtgttaatgttaccatcatcactacacatgccaatgc 26223289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 26178752 - 26178962
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgccttgttattca 100  Q
    |||||||||||||  |||||||| ||||||||||||||||| || | ||||||||||||||| ||||||||| ||||||| || ||||| |    ||||     
26178752 cctggtcatatgattcctatgatagacacagcaagactattcgccatgcatggtgttaatgttaccatcatcgctacacatgccaatgcttcaacattcc 26178851  T
101 agaaagccatcgacaacgacttgttttctggatattccatcaaaacttgtgtgattcaattccctgcagcccaagttggtcttccagatggtgttgaaaa 200  Q
    | ||| | || ||||  |||||   ||| ||||| ||||||||||||  | | || || |||||| |||| || || ||||| || ||||||||||||||    
26178852 aaaaatctatagacagtgacttcaattcaggatactccatcaaaactcatcttatacagttcccttcagctcaggtaggtctccctgatggtgttgaaaa 26178951  T
201 catcaaagatg 211  Q
    ||| |||||||    
26178952 catgaaagatg 26178962  T

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Target: chr7; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26082399 - 26082487
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgc 89  Q
    ||||| |||||||| || ||||| | |||||||||||||||||| | ||||||||||||||| ||||||||||||||||| || |||||    
26082399 cctggccatatgaatccaatgatagccacagcaagactatttgccatgcatggtgttaatgttaccatcatcactacacatgccaatgc 26082487  T

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Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26106186 - 26106274
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacacaagcaaatgc 89  Q
    ||||| |||||||| || ||||| | |||||||||||||||||| | ||||||||||||||| ||||||||||||||||| || |||||    
26106186 cctggccatatgaatccaatgatagccacagcaagactatttgccatgcatggtgttaatgttaccatcatcactacacatgccaatgc 26106274  T

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Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26184941 - 26185008
Alignment:
1 cctggtcatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgtcaccat 68  Q
    ||||| |||||||| || ||||| | |||| |||||||||||||||||||||||||||||||||||||    
26184941 cctggccatatgaatcccatgatagccacatcaagactatttgcaaagcatggtgttaatgtcaccat 26185008  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 26155031 - 26155111
Alignment:
160 ttccctgcagcccaagttggtcttccagatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatc 240  Q
    |||||| |||| ||||||||||| || ||||||||||||||||| |||||||  |||||   |||||| || |||||||||    
26155031 ttcccttcagctcaagttggtctccctgatggtgttgaaaacatgaaagatggaacttcatttgaaatactaggtaaaatc 26155111  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 26240110 - 26240166
Alignment:
155 ttcaattccctgcagcccaagttggtcttccagatggtgttgaaaacatcaaagatg 211  Q
    ||||||||||| || |  |||||||||| || ||||||||||||||||| |||||||    
26240110 ttcaattcccttcaacttaagttggtctccctgatggtgttgaaaacatgaaagatg 26240166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 26297286 - 26297354
Alignment:
173 aagttggtcttccagatggtgttgaaaacatcaaagatgccacttcccatgaaatgcttggtaaaatca 241  Q
    |||||||||| ||||| ||| |||||||||  |  ||||||||||| | ||||||||||| ||||||||    
26297286 aagttggtctcccagagggtattgaaaacacgatcgatgccacttcacttgaaatgcttgttaaaatca 26297354  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 44902934 - 44902989
Alignment:
25 gacacagcaagactatttgcaaagcatggtgttaatgtcaccatcatcactacaca 80  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
44902934 gacacagcaagactatttgcaaagcatggtgttaatgttaccatcatcactacaca 44902989  T

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