View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_high_17 (Length: 289)
Name: NF14945_high_17
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 50005413 - 50005681
Alignment:
| Q |
17 |
acacagaagcaaggtggacccttaaaccgtgacgattttctcactcgaaatgatgtgcgcaacatggaaaggactattcataattcttcacgtgagctac |
116 |
Q |
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| T |
50005413 |
acacagaagcaaggtggacccttaaaccgtggcgattttctcactcgaaatgatgtgcgcaacatggaaaggactattcataattcttcacgtgagctac |
50005512 |
T |
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| Q |
117 |
tgggaaatgaagaatgcagtgtaaagatatggattcagcgtcatcagaaggacgttttctatttccaagataactcaggctcagaatcttttattgtggc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50005513 |
tgggaaatgaagaatgcagtgtaaagatatggattcagcgtcatcagaaggacattttctatttccaagataactcaggctcagaatcttttattgtggc |
50005612 |
T |
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| Q |
217 |
tatacagacagattggcagctgcaacaaatgcttcgttatgaaagtaatagtttcatttcttttcactc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50005613 |
tatacagacagattggcagctgcaacaaatgcttcgttatggaagtaatagtttcatttcttttcactc |
50005681 |
T |
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