View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_high_24 (Length: 221)
Name: NF14945_high_24
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2623922 - 2624142
Alignment:
| Q |
1 |
ttctaaccattaaattggtctttattttggaaactttgtttatattattttannnnnnncttgtttctaacatgcagagtgttaaactagagttgagtgc |
100 |
Q |
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| T |
2623922 |
ttctaaccattaaattggtctttattttggaaactttgtttatattattttatttttt-cttgtttctaacatgcagagtgttaaactagagttgagtgc |
2624020 |
T |
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| Q |
101 |
agacaac-gtgttggtttcctctctgacatatcacgagtcctcagagaaaatagtcttgttattgtacgagcattcataaacttgttctctagtttagtc |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624021 |
agacaacagtgttggtttcctctctgacatatcacgagtcctcagagaaaatagtcttgttattgtacgagcattcataaacttgttctctagtttagtc |
2624120 |
T |
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| Q |
200 |
ttttggagaaatttcattctca |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
2624121 |
ttttggagaaatttcattctca |
2624142 |
T |
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