View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_high_4 (Length: 405)
Name: NF14945_high_4
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_high_4 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 20134 - 20522
Alignment:
| Q |
15 |
aataatctttcgtttaagtatgaattgttatttaatgacggtaaatatatctttctaaccgtatctttttatgtattgaatgaacaatcatttcataggt |
114 |
Q |
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| T |
20134 |
aataatcttccgtttaagtatgacttgttatttaatgacggtaaatatatctttctaaccgtatctttgcatgtattgaatgaacaatcatttcataggt |
20233 |
T |
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| Q |
115 |
ctcatcaaattagtaacgttggactatggatatttgtatcatggagacattgaatgttgtgtttgattgttgtacaggaatcatgaagcatgataataga |
214 |
Q |
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| T |
20234 |
ctcatcaaattagtaacattggactatggatatttgtatcatggagagattgaatgttgtgtttgattgttgtacaggaatcatgaagcatgataataga |
20333 |
T |
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| Q |
215 |
ggatgttgattagatcggttcatattttttggtggtgtcaacatcatttacttttgtacttccaatgtaaattttacattttatatagaacaaaatgaca |
314 |
Q |
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| T |
20334 |
ggatgttgattagatcggttcatattttttggtggtgtcaacatcttttatttttgtacttccaatgtgaattttgcattttatatagaatgcaa--aca |
20431 |
T |
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| Q |
315 |
tttgatcgaaatgggtctaatgttatttgaagaaaaggt--------gagaggacctttagaattgatatagtcttgtcttaactttgaat |
397 |
Q |
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| T |
20432 |
tttgatcgaaatgggtgtaatgttacttgacgaaaaggtgagaacaagagaggacctttagaattgatatagtcttggcttaactttgaat |
20522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 10440607 - 10440542
Alignment:
| Q |
45 |
tttaatgacggtaaatatatctttctaaccgtatctttttatgtattgaatgaacaatcatttcat |
110 |
Q |
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| T |
10440607 |
tttaatgacggtaaatatatctttctaaccgtatcttttcatgtattgaatgaacaatcatttcat |
10440542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 10440399 - 10440340
Alignment:
| Q |
338 |
tatttgaagaaaaggtgagaggacctttagaattgatatagtcttgtcttaactttgaat |
397 |
Q |
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| T |
10440399 |
tatttgaagaaaaggtgagaggacctttagaattgatatagtcttggcttaattttgaat |
10440340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 10440466 - 10440426
Alignment:
| Q |
205 |
tgataatagaggatgttgattagatcggttcatattttttg |
245 |
Q |
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| T |
10440466 |
tgataatagaggatgttgattagatcggttcatattttttg |
10440426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 10440544 - 10440501
Alignment:
| Q |
162 |
cattgaatgttgtgtttgattgttgtacaggaatcatgaagcatga |
207 |
Q |
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| T |
10440544 |
cattgaatgttgt--ttgattgttgtacaggaatcatgaagcatga |
10440501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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