View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14945_high_8 (Length: 367)

Name: NF14945_high_8
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14945_high_8
NF14945_high_8
[»] chr3 (1 HSPs)
chr3 (19-308)||(46166343-46166632)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 46166343 - 46166632
Alignment:
Q  19 caaattctccttttccttctccttttatcttctatgctctccttatcttttaattataaattatcaaacacagccgaagttgaaaatgcacacagcctaa 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  46166343 caaattctccttttccttctccttttatcttctacgctctccttatcttttaattataaatgatcaaacacagccgaagttgaaaatgcttacagcctaa 46166442  T
Q  119 gttgaaaatgtgctaaaggtacaataataaaagacatcaaaccgaagatccacagacagacaattatcaaatagatcgaggagatagtgaaagggtatag 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  46166443 gttgaaaatgtgctagaggtacaataataaaagacatcaaaccgaagatccacagacaggcaattatcaaatagatcgagaagataatgaaagggtatag 46166542  T
Q  219 aatctcgtaaagaaaaagttgcaatatcaagtgaggcatgtgtgacaacattctgtgaacaaaattatatcctctttagtcttgaccatg 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46166543 aatctcgtaaagaaaaagttgcaatatcaagtgaggtatgtgtgacaacattctgtaaacaaaattatatcctctttagtcttgaccatg 46166632  T

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