View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_low_11 (Length: 337)
Name: NF14945_low_11
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 12054073 - 12053762
Alignment:
| Q |
8 |
ggatcaaagttgtgatttctatnnnnnnnnttgaactttttaacctgtcaatgctactattccagatagcacccccaaaactacactaccgatcaaacga |
107 |
Q |
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| T |
12054073 |
ggatcaaagttgtgatttctaaaaaaaaaattgaactttttaacctgtcaatgctactattccagatagcacccccagaactacactaccgatcaaacga |
12053974 |
T |
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| Q |
108 |
taagtcggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagt |
207 |
Q |
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| T |
12053973 |
caagttggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagt |
12053874 |
T |
|
| Q |
208 |
cattcacttgtcatctttatatagaaaaacttcacgtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12053873 |
cattcacttgtcatctttatatagaaaaacttcacgtattatgtttctttgcaagcaatatgggactaaaagccatatttatactctctactttcacacc |
12053774 |
T |
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| Q |
308 |
tcacttggcact |
319 |
Q |
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|||||||||||| |
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| T |
12053773 |
tcacttggcact |
12053762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 38 - 319
Target Start/End: Complemental strand, 12074510 - 12074230
Alignment:
| Q |
38 |
ttgaactttttaacctgtcaatgctactattccagatag-cacccccaaaactacactaccgatcaaacgataagtcggaaaagttggcagtttcggggg |
136 |
Q |
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| T |
12074510 |
ttgaactttttaaactgtgaatgctactactcaagaaactcaccactggaactccactaccaatcaaatgataagtcggagaagttagtagtttcagtgg |
12074411 |
T |
|
| Q |
137 |
tgtggcactagaacagtgtcattgggacaggaataaccaatagacatctcagccaaattgcatttgttagtcattcacttgtcatctttatatagaaaaa |
236 |
Q |
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| T |
12074410 |
tgtggcccttgaacagtgtcattaggacaggaataaccaaaagacatctctgtcaaattgcaattgttagtaattcacttaccatc-ttatatagaacaa |
12074312 |
T |
|
| Q |
237 |
cttcacgtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacctcacttggcact |
319 |
Q |
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| T |
12074311 |
cttcacgtgttatgtttctttcctagcaatatgggactaaaagccatatttttactctctactttcacacc-cacttggcact |
12074230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 86 - 292
Target Start/End: Complemental strand, 12075866 - 12075660
Alignment:
| Q |
86 |
aactacactaccgatcaaacgataagtcggaaaagttggcagtttcgggggtgtggcactagaacagtgtcattgggacaggaataaccaatagacatct |
185 |
Q |
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||||||| |||| |||||| |||||||| || ||||||| | |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12075866 |
aactacattaccaatcaaatgataagtcagagaagttggtaatttcagcggtgtggcacttgaacagtgtcattgggacaggaataaccaatagacatct |
12075767 |
T |
|
| Q |
186 |
cagccaaattgcatttgttagtcattcacttgtcatctttatatagaaaaacttcacgtattatgtttctttgcaagcaatatgggcctaaaagccatat |
285 |
Q |
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| | ||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| || ||| |
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| T |
12075766 |
ctgtcaaattgcaattgttagtcattcatttgttatctttatatagaacaacttcacgtattatgtttctttgctagcaatatgggactaaaaaccctat |
12075667 |
T |
|
| Q |
286 |
ttatact |
292 |
Q |
| |
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|| |||| |
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| T |
12075666 |
ttttact |
12075660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 12058689 - 12058582
Alignment:
| Q |
209 |
attcacttgtcatctttatatagaaaaacttcac--gtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacac |
306 |
Q |
| |
|
||||||||| |||||| ||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
12058689 |
attcacttgccatctt-atatataacaacttcacatgtgttatgtttctttgctagcaatatgggactaaaagccatatttacactgtctactttcacac |
12058591 |
T |
|
| Q |
307 |
ctcacttgg |
315 |
Q |
| |
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||||||||| |
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| T |
12058590 |
ctcacttgg |
12058582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 317
Target Start/End: Complemental strand, 12047073 - 12046950
Alignment:
| Q |
195 |
tgcatttgttagtcattcacttgtcatctttatatagaaaaacttcac--gtattatgtttctttgcaagcaatatgggcctaaaagccatatttatact |
292 |
Q |
| |
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|||| |||||||| ||||||||| ||||| ||||| || |||||||| || |||| ||||||||| |||||| |||| ||||||||||| |||||||| |
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| T |
12047073 |
tgcaattgttagtaattcacttgcaatctt-atatataacaacttcacatgtgttatttttctttgctagcaatgtgggactaaaagccatttttatact |
12046975 |
T |
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| Q |
293 |
ctctactttcacacctcacttggca |
317 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
12046974 |
atctactttcacacctctcttggca |
12046950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 12062788 - 12062654
Alignment:
| Q |
38 |
ttgaactttttaacctgtcaatgctactattccagatagcaccccca----aaactacactaccgatcaaacgataagtcggaaaagttggcagtttcgg |
133 |
Q |
| |
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|||||| |||||| |||||||||||||||||| ||| | || | ||| ||||||||| || ||||||| |||||| || ||||||| |||||| | |
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| T |
12062788 |
ttgaacattttaaactgtcaatgctactattc-agacaccatcaccacttgaaactacacaacggatcaaatgataaggtagagaagttggtagtttcag |
12062690 |
T |
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| Q |
134 |
gggtgtggcactagaacagtgtcattgggacaggaa |
169 |
Q |
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| T |
12062689 |
cggtgtggcacttgaacagtgtcattgggacaggaa |
12062654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 12066763 - 12066675
Alignment:
| Q |
224 |
ttatatagaaaaacttcac--gtattatgtttctttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacctcactt |
313 |
Q |
| |
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|||||||||| |||||||| || ||||||||||||| |||||| |||| ||||||||||| |||||| ||| ||||| ||||||||||| |
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| T |
12066763 |
ttatatagaacaacttcacatgtgttatgtttctttggtagcaatgtgggactaaaagccat-tttata--ctcaacttttacacctcactt |
12066675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 34583284 - 34583347
Alignment:
| Q |
256 |
ttgcaagcaatatgggcctaaaagccatatttatactctctactttcacacctcacttggcact |
319 |
Q |
| |
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|||| |||||| |||| || ||| |||||||| |||||||||||||||||||||||||| |||| |
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| T |
34583284 |
ttgctagcaatgtgggacttaaaaccatatttctactctctactttcacacctcacttgccact |
34583347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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