View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_low_12 (Length: 337)
Name: NF14945_low_12
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 321
Target Start/End: Complemental strand, 28703585 - 28703327
Alignment:
| Q |
59 |
attaatttagacattaaactcaaataattgtttacataactannnnnnnnaagtaagcaacttnnnnnnnnnnnncattcctaaacctagaatcaattgt |
158 |
Q |
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| T |
28703585 |
attactttagacattaaactcaaataattgtttacataactattttttttaagtaagcaacttaaaaaaa-----cattcctaaacctagaatcaattgt |
28703491 |
T |
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| Q |
159 |
gatcgaactttgaatgatccttgcaaacgtctgaaaaagattaaataatagtggattgagat-nnnnnnnnnnnnnnnnntttaagtgagtttccaaact |
257 |
Q |
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| T |
28703490 |
gatcgaattttgaatgatccttgcaaacgtctgaaaaagattaaataatagtggattgagataaaaaaaaaaaaaataaatctaaatgagtttccaaact |
28703391 |
T |
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| Q |
258 |
tgggataaaacgtcatccatacctttaaacgaggatattattttcagtgttaaattcataaaac |
321 |
Q |
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| T |
28703390 |
taggataaaacgtcatccatacctttaaacgaggatattattttcagtgttaaattcataaaac |
28703327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 28703676 - 28703620
Alignment:
| Q |
6 |
gaagaatatagaacgatacatggaaaactttctttgaaatgcttaaaaacttgatta |
62 |
Q |
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| T |
28703676 |
gaagaatatagaacgatacatggaaaactggctttgagatgcttgaaaacttgatta |
28703620 |
T |
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