View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14945_low_14 (Length: 307)
Name: NF14945_low_14
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 55560684 - 55560876
Alignment:
| Q |
1 |
gcaatttggctagctaattattataatattcattagagttcgtatgatgttagatttcaagaggttcctatcgtgaaactccaagatctcctctttgata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55560684 |
gcaatttggctagctaattattataatattcattagagttcgtatgatgttagatttctagaggttcctatcgtgaaactccaagatctcctctttgata |
55560783 |
T |
|
| Q |
101 |
acatgtcaaaagcctgta---ttaagaatatagtgtagtcttgtagttttcttttctcttagg-tttgcccttttgaacaattaaaaagttca |
189 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55560784 |
acatgtcaaaagcttgtatttttaagaatatagtgtagtcttgtagttttcttttctcttaggttttgcccttttgaacaattaaaaagttca |
55560876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 55560932 - 55560969
Alignment:
| Q |
247 |
agtgtaatccgtaatctagattatagtatatcaggtgg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55560932 |
agtgtaatccgtaatctagattatagtatatcaggtgg |
55560969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University