View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_low_2 (Length: 528)
Name: NF14945_low_2
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 13126326 - 13126008
Alignment:
| Q |
18 |
gtaactagtgtggctaaatgagagattaactcaaaagcataaacagtagttttcagactcattatgattatcattcatagcacctgttaacagcgacaac |
117 |
Q |
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| T |
13126326 |
gtaactagtgtggccaaatgagagattaactcaaaagcataaacagtagttttcagactcattatgattatcattcatagcacctgttaacagcgacaac |
13126227 |
T |
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| Q |
118 |
ttatttaatttccctgtctcctcagaccaatataaaactaacggccccgatttctccgtcagaaacaatcacaaccgtcaaactccactcaaaccttgtc |
217 |
Q |
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| T |
13126226 |
ttatttaatttccctgtctcctcagaccaatattaaactaacggccccgatttctccgtcagaaacaatcacaaccgtcaaactccactcaaaccttgtc |
13126127 |
T |
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| Q |
218 |
ccacttaatcaatatcaaaactaactaaacgacactactttccatcttatttcccattttacccttactcgttccaaataacttttggtttttccgtctt |
317 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13126126 |
ccacttaatcaatatc-aaactaactaaacgacactactttccatattatttcccattttacccttactcgttccaaataacttttggtttttccgtctt |
13126028 |
T |
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| Q |
318 |
aacactt-ccattcattgcg |
336 |
Q |
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||||||| |||||||||||| |
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| T |
13126027 |
aacacttcccattcattgcg |
13126008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 385 - 488
Target Start/End: Complemental strand, 13125959 - 13125856
Alignment:
| Q |
385 |
gcttaactcaataatcgattttcttacaaacgtgcttttgattctctgcttttcattctcttcagctcttcaaaatcttcttgttgttgttgatagtgtg |
484 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13125959 |
gcttaactcaataatcgattttcttacaaacgtgctattgattctctgcttttcattctcttcagctcttcaaaatcttcttgttgttgttgatagtgtg |
13125860 |
T |
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| Q |
485 |
agta |
488 |
Q |
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|||| |
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| T |
13125859 |
agta |
13125856 |
T |
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