View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14945_low_25 (Length: 224)
Name: NF14945_low_25
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 15168249 - 15168441
Alignment:
| Q |
15 |
aatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttgcctgcgtcctctatgtatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15168249 |
aatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggtgtgttgcctgcgtcctctatgtatg |
15168348 |
T |
|
| Q |
115 |
aaaagctaattttgtattgttgtgccaaggacaaggtataattttcatctctcatattacggttatcaatcaaataaatataattgtcataaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15168349 |
aaaagctaattttgtattgttgtgccaaggacaaggtataattttcatctctcatattacggttatcaatcaaataaatataattgtcataaa |
15168441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 15172988 - 15173132
Alignment:
| Q |
25 |
ttatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatga |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
15172988 |
ttatatggtttgttggtaatttcaaggttgagcatatcataaaaaagattgagaatttgcatggtgtgttggaaattttgcctgcgtcctctatgtatga |
15173087 |
T |
|
| Q |
116 |
aaagctaattttgtattgttgtgccaaggacaaggtataattttc |
160 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
15173088 |
aaagctaattttgtattgctgtggcaaggacaaggtataattttc |
15173132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 15164555 - 15164627
Alignment:
| Q |
15 |
aatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatg |
87 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
15164555 |
aatatagactatagatggtatgttgataatttcaaggttgagtatgtcatagaaaagatccagaatttgcatg |
15164627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 55809604 - 55809483
Alignment:
| Q |
15 |
aatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcg---tgttgcctgcgtcctctatgt |
111 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||||| ||||||||| |||||| |||||||||||||| | | |||| ||| |||||||||| |
|
|
| T |
55809604 |
aatatagacattagatggtatgttgctaatttcaaggttgatcatatcataagaaagatggagaatttgcatggtgaaattttgcatgcttcctctatgt |
55809505 |
T |
|
| Q |
112 |
atgaaaagctaattttgtattg |
133 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
55809504 |
atgaaaagctagtattgtattg |
55809483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 55806278 - 55806160
Alignment:
| Q |
17 |
tatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcg---tgttgcctgcgtcctctatgtat |
113 |
Q |
| |
|
||||||||||| ||||| ||||| |||||| |||||||| ||||||||| |||||| ||||||||| ||| | | |||||||| |||||||||||| |
|
|
| T |
55806278 |
tatagacattagatggtatgttgctaattttaaggttgatcatatcataagaaagatggagaatttgactggtgaaattttgcctgcttcctctatgtat |
55806179 |
T |
|
| Q |
114 |
gaaaagctaattttgtatt |
132 |
Q |
| |
|
||||||||| | ||||||| |
|
|
| T |
55806178 |
gaaaagctagtattgtatt |
55806160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 29709368 - 29709486
Alignment:
| Q |
18 |
atagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcg---tgttgcctgcgtcctctatgtatg |
114 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||||||||| ||||||||| |||||| |||||||||||||| | | |||||||| ||||||||||||| |
|
|
| T |
29709368 |
atagacattagatggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtgatattttgcctgcttcctctatgtatg |
29709467 |
T |
|
| Q |
115 |
aaaagctaattttgtattg |
133 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
29709468 |
aaaagctagtattgtattg |
29709486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 1523229 - 1523373
Alignment:
| Q |
25 |
ttatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatga |
115 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| ||||| || |||| ||||||||||||| | || ||| | ||||||| |||||| |
|
|
| T |
1523229 |
ttatatcgtttgttggtaatttcaaggttgagcatctcataaaagagattgagaatttgcatgatctaatgaatatttcaccttcatcctctacgtatga |
1523328 |
T |
|
| Q |
116 |
aaagctaattttgtattgttgtgccaaggacaaggtataattttc |
160 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
1523329 |
aaagctaattttgtattgttgtggtaagaacaaggtataattttc |
1523373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 8493088 - 8492960
Alignment:
| Q |
41 |
taatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatgaaaagctaattttgtat |
131 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||||||| || ||||| ||| | | |||| ||||||||||||||||||||||| |
|
|
| T |
8493088 |
taatttcaaggttgagcatatcataaaagagattgagaatttgcacggtttgttgaaaatttcacctacattctctttgtatgaaaagctaattttgtat |
8492989 |
T |
|
| Q |
132 |
tgttgtgccaaggacaaggtataattttc |
160 |
Q |
| |
|
|| |||| ||| |||||||||||||||| |
|
|
| T |
8492988 |
tgctgtggtaagaacaaggtataattttc |
8492960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 8519661 - 8519533
Alignment:
| Q |
41 |
taatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatgaaaagctaattttgtat |
131 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||||||| || ||||| ||| | | |||| ||||||||||||||||||||||| |
|
|
| T |
8519661 |
taatttcaaggttgagcatatcataaaagagattgagaatttgcacggtctgttgaaaatttcacctacattctctttgtatgaaaagctaattttgtat |
8519562 |
T |
|
| Q |
132 |
tgttgtgccaaggacaaggtataattttc |
160 |
Q |
| |
|
|| |||| ||| |||||||||||||||| |
|
|
| T |
8519561 |
tgctgtggtaagaacaaggtataattttc |
8519533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University