View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_low_27 (Length: 205)
Name: NF14945_low_27
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 7e-45; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 6525839 - 6526018
Alignment:
| Q |
10 |
gaagcaaaggtaagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacactaat |
109 |
Q |
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||||||| |||||||||| ||| || |||||||||||||| || ||||| ||||||||||||| ||||||||| |||||||| ||||||||||||| ||| |
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| T |
6525839 |
gaagcaatggtaagagctgaatcccaagcctacattctttccattcagctggaccaaaccataaaccactgtctcttttgttcgaccaaagtacaccaat |
6525938 |
T |
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| Q |
110 |
aactttcttaattttagtaaactctttctcatacatatttcctccttatttcacatgccaccacattttagcagcaagaa |
189 |
Q |
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| || || ||||| ||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |
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| T |
6525939 |
tatcttattgtttttactaaacactttctcatacatattccctccttcttttacatgccaccacattttagcagcaagaa |
6526018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 1842456 - 1842321
Alignment:
| Q |
18 |
ggtaagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacactaataactttct |
117 |
Q |
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|||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||| || ||||||||||| || | |
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| T |
1842456 |
ggtaagagctgaatgccgagccaacattctttccactcagcaggaccaaaccatagacca-tgtctcttttgttagaccacagaacactaataaccttat |
1842358 |
T |
|
| Q |
118 |
taattttagtaaactctttctcatacatatttcctcc |
154 |
Q |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
1842357 |
tatttttagtaaactctttctcatacatatttcctcc |
1842321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 1828497 - 1828419
Alignment:
| Q |
113 |
tttcttaattttagtaaactctttctcatacatatttcctccttatttcacatgccaccacattttagcagcaagaact |
191 |
Q |
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| T |
1828497 |
tttcttaattttagtaaactctttctcatacatatttcctccttatttcacatgccaccacattttagcagcaagaact |
1828419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 1832432 - 1832303
Alignment:
| Q |
18 |
ggtaagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacactaataactttct |
117 |
Q |
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|||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| | |
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| T |
1832432 |
ggtaagagctgaatgccgagccgacattctttccactcagcaggaccaaaccatagaccactgtctcttttgtaagaccaaagaacactga--------- |
1832342 |
T |
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| Q |
118 |
taattttagtaaactctttctcatacatatttcctcctt |
156 |
Q |
| |
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|| ||||||||||| ||||||||||||||||| |||||| |
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| T |
1832341 |
tacttttagtaaacactttctcatacatattttctcctt |
1832303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 1836205 - 1836129
Alignment:
| Q |
36 |
agcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacactaataac |
112 |
Q |
| |
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|||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
1836205 |
agccgacattctttccactcagctggaccaaaccatagaccactgtctcttttgttagaccaaagtatactaataac |
1836129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 1847085 - 1846958
Alignment:
| Q |
11 |
aagcaaaggtaagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacactaata |
110 |
Q |
| |
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|||||| |||||||||| ||| ||||||| ||||||||| |||| ||||||||||||||||||| || |||| |||| || ||||||||||||| |
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| T |
1847085 |
aagcaatggtaagagctgaattccgagccgacattctttccactgagccggaccaaaccatagagcattgtctcttt-------cctaagtacactaata |
1846993 |
T |
|
| Q |
111 |
actttcttaattttagtaaactctttctcatacat |
145 |
Q |
| |
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|| || ||| | ||||||||| ||||||||||||| |
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| T |
1846992 |
accttattattgttagtaaacactttctcatacat |
1846958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 6464801 - 6464896
Alignment:
| Q |
10 |
gaagcaaaggtaagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacac |
105 |
Q |
| |
|
||||||| |||||||||| ||| || |||||||||||||| || |||| ||| ||||||||| |||||||| || ||||||| |||||| |||| |
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| T |
6464801 |
gaagcaatggtaagagctgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctctcttgttagcccaaagaacac |
6464896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 6473745 - 6473574
Alignment:
| Q |
18 |
ggtaagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacactaataactttct |
117 |
Q |
| |
|
|||| ||||| ||| || |||||||||||||| || |||||||| ||||||||| |||||||| || ||||||||||| || || | || | | | |
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| T |
6473745 |
ggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctat |
6473646 |
T |
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| Q |
118 |
taattttagtaaactctttctcatacatatttcctccttatttcacatgccaccacattttagcagcaagaa |
189 |
Q |
| |
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| ||| ||||| |||| |||||| | ||| |||||| ||| |||||||||||||||||||||||||||| |
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| T |
6473645 |
tctcttttgtaaaatcttcctcatagagattctctccttcttttacatgccaccacattttagcagcaagaa |
6473574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 1846107 - 1846161
Alignment:
| Q |
21 |
aagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagac |
75 |
Q |
| |
|
||||||| |||||| |||| ||||||||| ||||| || |||||||||||||||| |
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| T |
1846107 |
aagagctcaatgccaagccgacattctttccactctgcaggaccaaaccatagac |
1846161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 46382896 - 46383067
Alignment:
| Q |
18 |
ggtaagagcttaatgccgagcctacattcttttcactcagccggaccaaaccatagaccactgtcacttttgttagaccaaagtacactaataactttct |
117 |
Q |
| |
|
|||||||||| ||| || || |||| ||| || |||| ||| ||||||||||||||||||||||| ||||||||||||||||||| || ||| || || | |
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| T |
46382896 |
ggtaagagctgaatcccaaggctacgttccttccacttagctggaccaaaccatagaccactgtctcttttgttagaccaaagtataccaattaccttat |
46382995 |
T |
|
| Q |
118 |
taattttagtaaactctttctcatacatatttcctccttatttcacatgccaccacattttagcagcaagaa |
189 |
Q |
| |
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| || | | ||| |||| ||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
46382996 |
tctcttcactgaacactttatcatacatattcacttttcctttcacatgccaccacattttagcagcaagaa |
46383067 |
T |
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