View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_low_3 (Length: 459)
Name: NF14945_low_3
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 14456967 - 14456532
Alignment:
| Q |
9 |
agcaaaggtggaaatgaagtccctaaaggacatgaactcatatgaagaaaagatacttggaatggtggtaaccaattgtcactgacatttaatgtaaaca |
108 |
Q |
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| T |
14456967 |
agcaaaggtggaaatgaagtccctaaaggacatgaactcatatgaagaaaagatacttggaatggtggtaaccaattgtcactgacatttaatgtaaaca |
14456868 |
T |
|
| Q |
109 |
aattggaagacattatcagcctcttcaacttacttagctttgaaaagtggtcttcagttaccatgcctgtcaacttattgaaagaaatatctaaccgcga |
208 |
Q |
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| T |
14456867 |
aattggaagacattatcaacctcttcaacttaattagctttgaaaaatggtcttcagttaccatgcctgtcaacttattgaaagaaagatctaactgcga |
14456768 |
T |
|
| Q |
209 |
tagcttagaaagttgtcctaaactatctgggagggtaccatttaatttattatcttcaagttccaaactgtttatatttttcaatgaccctaaggataca |
308 |
Q |
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| T |
14456767 |
tagcttagaaagttgtcctaaactatctgggagggtaccatttaatttattatcttcaagttccaaactgtttatatttttcaatgaccctaaggataca |
14456668 |
T |
|
| Q |
309 |
ggaatgggaccttcaagttgattatgtgcaagacttagacgggctagattttcaagttgaactaaccaatctggaattttaccatgtagttggttgttgg |
408 |
Q |
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| T |
14456667 |
ggaataggaccttcaagttgattatgtgcaagacttagacgggctaggttttcaagttgaactaaccaatctggaattttaccatgtagttggttgttgg |
14456568 |
T |
|
| Q |
409 |
tcatttcaaaaaactcaagactaggaagaggttttt |
444 |
Q |
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| T |
14456567 |
tcatttcaaaaaactcaagactaggaagaggttttt |
14456532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 38 - 259
Target Start/End: Original strand, 14469991 - 14470212
Alignment:
| Q |
38 |
acatgaactcatatgaagaaaagatacttggaatggtggtaaccaattgtcactgacatttaatgtaaacaaattggaagacattatcagcctcttcaac |
137 |
Q |
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|||||||| |||| ||||||| |||| ||||||||| |||| ||||||| |||||||||| | || | |||||||||| | |||| ||| ||| |
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| T |
14469991 |
acatgaacccataagaagaaacgatatttggaatggcggtatccaattggcactgacattcatcgtgagtgaattggaagataggatcacagtctccaat |
14470090 |
T |
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| Q |
138 |
ttacttagctttgaaaagtggtcttcagttaccatgcctgtcaacttattgaaagaaatatctaaccgcgatagcttagaaagttgtcctaaactatctg |
237 |
Q |
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|| | ||| ||||||| || |||||||||||||| |||||||| | ||||||||||| |||||| | || | ||||||||| ||||||| ||||| || |
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| T |
14470091 |
tttgtcagccttgaaaaatgttcttcagttaccattcctgtcaattgattgaaagaaacatctaagtgtgacaacttagaaagctgtcctatactatatg |
14470190 |
T |
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| Q |
238 |
ggagggtaccatttaatttatt |
259 |
Q |
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| T |
14470191 |
gtagagtaccatttaatttatt |
14470212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 14494507 - 14494575
Alignment:
| Q |
133 |
tcaacttacttagctttgaaaagtggtcttcagttaccatgcctgtcaacttattgaaagaaatatcta |
201 |
Q |
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|||||||||| ||||||||||| |||| ||||||||||||||||| |||| |||| |||||||||||| |
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| T |
14494507 |
tcaacttactcagctttgaaaaatggtgttcagttaccatgcctgataactgattggaagaaatatcta |
14494575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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