View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14945_low_4 (Length: 436)
Name: NF14945_low_4
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14945_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 72 - 429
Target Start/End: Complemental strand, 1182893 - 1182536
Alignment:
| Q |
72 |
gaagcttcgaaaacgaatcttctagaagtgaatattttggttgaagttttaatggaagcagacataccaagaatttctctcgccggaaagagagtggctg |
171 |
Q |
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| T |
1182893 |
gaagcttcgaaaatgaatcttctagaagtgaatattttggttgaagttttaatggaagcagacataccaggaatttctctcgccggaaagagagtggctg |
1182794 |
T |
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| Q |
172 |
cagtggttaagtccgggagtgaaaccggttgtgttccgccgcagacgacggtccaagtggttaggaatgtgatgagtgtgttaaagtcaacgatcttatg |
271 |
Q |
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| T |
1182793 |
cagtggttaagtccgggagtgaaaccggttgtgttccgccgcagacgacggtccaagtggttaggaatgtgatgagtgtgttaaagtcaacgatcttatg |
1182694 |
T |
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| Q |
272 |
tgtaagggacacggtaattgcggtggaaccacaactgaacaaagtgaaacggattactaagagcatgttttgtttttcttgggtagttgggaggaagcat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182693 |
tgtaagggacacggtaattgcggtggaaccacaactgaacaaagtgaaacggattactaagagcatgttttgtttttcttgggtagttgggaggaagcat |
1182594 |
T |
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| Q |
372 |
tcaagcgtgttgaaattagggtttgtgaggatatcggagagattgctggtggtctgtg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1182593 |
tcaagcgtgttgaaattagggtttgtgaggatatcggagagattgctggtggtttgtg |
1182536 |
T |
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