View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14945_low_8 (Length: 371)

Name: NF14945_low_8
Description: NF14945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14945_low_8
NF14945_low_8
[»] chr1 (7 HSPs)
chr1 (17-353)||(44088333-44088669)
chr1 (169-277)||(44068260-44068366)
chr1 (169-277)||(44080280-44080386)
chr1 (169-291)||(44088254-44088370)
chr1 (56-132)||(44050303-44050382)
chr1 (99-139)||(44089748-44089788)
chr1 (225-271)||(44053449-44053495)
[»] chr8 (1 HSPs)
chr8 (294-351)||(4616753-4616810)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 44088333 - 44088669
Alignment:
Q  17 catagtttatactttattctgcttaaatgaaaattttctcaatgctagctatcgcaacttctcaaattcacacagtcgctactagatattaataaatttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088333 catagtttatactttattctgcttaaatgaaaattttctcaatgctagctatcgcaacttctcaaattcacacagtcgctactagatattaataaatttc 44088432  T
Q  117 ttcatttgatatttctatatattatgtttttcggttttgtttaacgcgatacattgctttttaataaagtgcttgttttcttattgatatggtttacgac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088433 ttcatttgatatttctatatattatgtttttcggttttgtttaacgcgatacattgctttttaataaagtgcttgttttcttattgatatggtttacgac 44088532  T
Q  217 atactttattatattgtttctcttaatttaactatgcatagtttatactttatttctgtttaaatgaaaattttcagtgtagataaatggcattgatatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088533 atactttattatattgtttctcttaatttaactatgcatagtttatactttatttctgtttaaatgaaaattttcagtgtagataaatggcattgatatt 44088632  T
Q  317 gcaaaagaatctcacaattatgtgattgcatgcaatt 353  Q
    |||||||||||||||||||||||||||||||||||||    
T  44088633 gcaaaagaatctcacaattatgtgattgcatgcaatt 44088669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 44068260 - 44068366
Alignment:
Q  169 attgctttttaataaagtg-cttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatacttt 267  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||   |||||||||||| |||||||| ||||||||||||||||     
T  44068260 attgctttctaataaagtggcttgttttcttattgatattgtttacgacatactttat---attgtttctctttatttaactgtgcatagtttatactta 44068356  T
Q  268 atttctgttt 277  Q
     |||||||||    
T  44068357 ctttctgttt 44068366  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 44080280 - 44080386
Alignment:
Q  169 attgctttttaataaagtg-cttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatacttt 267  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||  |||||||||||   |||||||||||| |||||||||||||||||| |||||||    
T  44080280 attgctttctaataaagtggcttgttttcttattgatattgtttagaacatactttat---attgtttctctttatttaactatgcatagttaatacttt 44080376  T
Q  268 atttctgttt 277  Q
    ||||||||||    
T  44080377 atttctgttt 44080386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 291
Target Start/End: Original strand, 44088254 - 44088370
Alignment:
Q  169 attgctttttaataaagtgc-ttgttttcttattgatatggtttacgacatactttattatattgtttctcttaatttaactatgcatagtttatacttt 267  Q
    |||||||| ||||||||||| |||||||||||||||||| | |||| |||||||||||      ||||||||| |||||||| |||||||||||||||||    
T  44088254 attgctttctaataaagtgcattgttttcttattgatattgcttactacatactttat------gtttctcttgatttaactgtgcatagtttatacttt 44088347  T
Q  268 atttctgtttaaatgaaaattttc 291  Q
    | ||||| ||||||||||||||||    
T  44088348 a-ttctgcttaaatgaaaattttc 44088370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 44050303 - 44050382
Alignment:
Q  56 caatgctagctatcgcaacttctcaaattcacacagtcgctactagatat---taataaatttcttcatttgatatttct 132  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||    
T  44050303 caatgctagctattgcaacttctcaaattcacacagtcaatactagatattagtaataaatttcttcatttgatatttct 44050382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 44089748 - 44089788
Alignment:
Q  99 tagatattaataaatttcttcatttgatatttctatatatt 139  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  44089748 tagatattaatgaatttcttcatttgatatttctgtatatt 44089788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 44053449 - 44053495
Alignment:
Q  225 ttatattgtttctcttaatttaactatgcatagtttatactttattt 271  Q
    |||||||  |||||||||||||||| | |||||||||||||||||||    
T  44053449 ttatattagttctcttaatttaactgtccatagtttatactttattt 44053495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 4616753 - 4616810
Alignment:
Q  294 tgtagataaatggcattgatattgcaaaagaatctcacaattatgtgattgcatgcaa 351  Q
    |||||| |||||||||| |||||||| |||||||||||| |||| | |||||||||||    
T  4616753 tgtagaaaaatggcattaatattgcagaagaatctcacagttatctaattgcatgcaa 4616810  T

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