View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14946_high_1 (Length: 402)
Name: NF14946_high_1
Description: NF14946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14946_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 13723932 - 13724307
Alignment:
| Q |
17 |
aataaaaaatcaaacccgttgattatgttggtgaatcctctaacagtaagaacttctcacagtgatataatatgaggtctctatagatttgactttaggc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13723932 |
aataaaaaatcaaacccgttgattatgttggtgaatcctctaacagtaagaacttctcacagtgataaaatatgaggtctctatagatttgactttaggc |
13724031 |
T |
|
| Q |
117 |
cccaaaaatttatagacacaactctaa-aaaattcatcgatattgagttcacgtctcttcatttattgaaagtccatgaatttaatattattcttcatca |
215 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13724032 |
cccaaaaatttctagacacaactataacaaaattcatcgatattaagttcacgtctcttcatttattgaaagtccatgagtttaatattattcttcatca |
13724131 |
T |
|
| Q |
216 |
tagtgtcaattcacgggcttattttaccactatgtgacacacaaagatattcttatcctagatgctttgcattattgtactattttccacctagatgctt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13724132 |
tagtgtcaattcacgggcttattttaccactatgtgacacacaaagatattcttatcctagatgctttgcattattgtactattttccacctagatgctt |
13724231 |
T |
|
| Q |
316 |
tgcaaagtttggattattgtactgttttccatttatatgtatgtgcaagtgacaaaaaagtacttctttttcttcacc |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13724232 |
tgcaaagtttggattattgtactgttttccatt--tatgtatgtgcaagtgacaaaaaagtacttctttttcttcacc |
13724307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University