View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14946_high_2 (Length: 387)
Name: NF14946_high_2
Description: NF14946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14946_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 7949628 - 7949248
Alignment:
| Q |
1 |
ctgtgttggaaagcttcaatctatgcaattcatcctgtctcatatttacagagaaggaaatcactgtgctgacaaacttgcaaacttaggcttatctatt |
100 |
Q |
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| T |
7949628 |
ctgtgttggaaagcttcaatctatgcaattcatcttgtctcatatttacagagaagaaaatcatcgtgctgacaaacttgcaaacttaggcttatctatt |
7949529 |
T |
|
| Q |
101 |
gttgatttcacttggtggtcctttccttcaattgtaattagaggggacctaggtaggaacaagctaggtcttcccaactttcgattttgttaatgttcct |
200 |
Q |
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| T |
7949528 |
gctgatttcactt-gtggtcctttcctccaattataattagaggggacctaggtaggaataagctaggtcttcccaactttcgattttgttaatgttcct |
7949430 |
T |
|
| Q |
201 |
ttgatggtttggttttgcc-ccctctcttttgtgttacactttttcatttatatattatagatgtcgcct-taggctcgtcaattat--------nnnnn |
290 |
Q |
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|||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
7949429 |
ttgagggtttggttttgccaccctctcttttgtattacaatttttcatttatatattatagatgtcgcctcaaggctcatcagttataaaaataaaataa |
7949330 |
T |
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| Q |
291 |
nnnnnnttattttacaaaataaagtgacaaccatgccaagacacttacaagttccaacccccgcatttgaaaccgtctctcc |
372 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
7949329 |
aataaattattatacaaaataaagtgacaaccatgccaagacacttacaagttccaacccccacatttgaagccgtctctcc |
7949248 |
T |
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