View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14946_high_5 (Length: 330)
Name: NF14946_high_5
Description: NF14946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14946_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 54638656 - 54638973
Alignment:
| Q |
7 |
agagattgatatgtcggagctcgagagtctcttctcggcagcagcccctagttcaggccctgccaagaagtcaaatgtccaaagctcagtgaagcctaaa |
106 |
Q |
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| T |
54638656 |
agagattgatatgtcagagctcgagagtctcttctcggcagcagcccctagttcaggccctgccaagaagtcaaatgtccaaagctcagtgaagcctaaa |
54638755 |
T |
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| Q |
107 |
tctgagaaagtgcaactggtaatttagcttcttcagttcgtagttgcatagggaatgtttttggatatttacataatctagttgttaatatctgaatttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54638756 |
tctgagaaagtgcaactggtaatttagcttcttcagttcgtagttgcatagggaatgtttttggatatttacataatctagttgttaatatctgaatttg |
54638855 |
T |
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| Q |
207 |
ataggaaaaggctagaaaagtaattagtaggaactaggaactaataatattataagcctggctatccttctattccagcaccatataatcctaaaggagt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54638856 |
ataggaaaaggctagaaaagtaattagtaggaactaggaactgataatattataaatctggctatccttctattccagcaccatataatcctaaaggagt |
54638955 |
T |
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| Q |
307 |
aaattgtgtcatttttca |
324 |
Q |
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|| ||||||||||||||| |
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| T |
54638956 |
aagttgtgtcatttttca |
54638973 |
T |
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