View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14946_low_1 (Length: 402)
Name: NF14946_low_1
Description: NF14946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14946_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 13723932 - 13724307
Alignment:
| Q |
17 |
aataaaaaatcaaacccgttgattatgttggtgaatcctctaacagtaagaacttctcacagtgatataatatgaggtctctatagatttgactttaggc |
116 |
Q |
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| T |
13723932 |
aataaaaaatcaaacccgttgattatgttggtgaatcctctaacagtaagaacttctcacagtgataaaatatgaggtctctatagatttgactttaggc |
13724031 |
T |
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| Q |
117 |
cccaaaaatttatagacacaactctaa-aaaattcatcgatattgagttcacgtctcttcatttattgaaagtccatgaatttaatattattcttcatca |
215 |
Q |
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||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13724032 |
cccaaaaatttctagacacaactataacaaaattcatcgatattaagttcacgtctcttcatttattgaaagtccatgagtttaatattattcttcatca |
13724131 |
T |
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| Q |
216 |
tagtgtcaattcacgggcttattttaccactatgtgacacacaaagatattcttatcctagatgctttgcattattgtactattttccacctagatgctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13724132 |
tagtgtcaattcacgggcttattttaccactatgtgacacacaaagatattcttatcctagatgctttgcattattgtactattttccacctagatgctt |
13724231 |
T |
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| Q |
316 |
tgcaaagtttggattattgtactgttttccatttatatgtatgtgcaagtgacaaaaaagtacttctttttcttcacc |
393 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13724232 |
tgcaaagtttggattattgtactgttttccatt--tatgtatgtgcaagtgacaaaaaagtacttctttttcttcacc |
13724307 |
T |
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