View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14946_low_3 (Length: 386)
Name: NF14946_low_3
Description: NF14946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14946_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 43166752 - 43166411
Alignment:
| Q |
11 |
catcatcacagtaacctataagactggtcaagtatttatgatgaactgtagcaaaaaatttggcctatgaatcacaaaggaaaaccatatttagttaaca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43166752 |
catcatcacagtaacctataagactggtcaagtatttatgatgaactgtagcaaaaaatttggcctatgaatcacaaagaaaaaccatatttagttaaca |
43166653 |
T |
|
| Q |
111 |
taaaattcattaactatctatacacacacacataggcatgataaaatttgaatgtgaattaatcatataacctctgcttgaaattgcagatatccttgag |
210 |
Q |
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| T |
43166652 |
ttaaattcattaactatctatacacacacacataggcatgataaaatttgaatgtgaattaatcatataacctctgcttgaaattgcagatatccttgag |
43166553 |
T |
|
| Q |
211 |
ctgatgaggaagacagcattttgacagcaacctcagtatcatggtcaatccagccgtggtagactgttccagatgctcctttccccaaaaccgtcttaaa |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43166552 |
ctgatgaggaagacagcattttgacagctacctcagtatcatggtcaatccagccgtggtagactgttccagatgctcctttccccaaaaccgtcttaaa |
43166453 |
T |
|
| Q |
311 |
gtttctggtaattctgtatacttcttcatagcggaattcttg |
352 |
Q |
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| T |
43166452 |
gtttctggtaattctgtatacttcttcgtagcggaattcttg |
43166411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 43221193 - 43221535
Alignment:
| Q |
11 |
catcatcacagtaacctataagactggtcaagtatttatgatgaactgtagcaaaaaatttggcctatgaatcacaaaggaaaaccatatttagttaaca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43221193 |
catcatcacagtaacctataagactggtcaagtatttatgatgaactgtagcaaaaaatttggcctatgaatcacaaagaaaaaccatatttagttaaca |
43221292 |
T |
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| Q |
111 |
taaaattcattaactatctatacacacacaca-tagg-----catga--taaaatttgaatgtgaattaatcatataacctctgcttgaaattgcagata |
202 |
Q |
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| ||||||||||||||| | || |||||| | |||| ||| | ||||||| | | |||||||||| ||| |||||||||||||||||||||| | |
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| T |
43221293 |
ttaaattcattaactatacacacgcacacagattaggattcacattaactaaaattggcaagtgaattaatgatacaacctctgcttgaaattgcagaaa |
43221392 |
T |
|
| Q |
203 |
tccttgagctgatgaggaagacagcattttgacagcaacctcagtatcatggtcaatccagccgtggtagactgttccagatgctcctttccccaaaacc |
302 |
Q |
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||||||||| ||| ||||||| ||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||| | |||| |
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| T |
43221393 |
tccttgagcagataaggaagatagcattttgacag-------tgtattatgatcaatccagccatggtagactgttccagatgctcctttccctataacc |
43221485 |
T |
|
| Q |
303 |
gtcttaaagtttctggtaattctgtatacttcttcatagcggaattcttg |
352 |
Q |
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||| |||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
43221486 |
ttctcaaagtttctggtaattcttaatacttcttcataggtgaattcttg |
43221535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 167 - 352
Target Start/End: Complemental strand, 43175582 - 43175397
Alignment:
| Q |
167 |
aattaatcatataacctctgcttgaaattgcagatatccttgagctgatgaggaagacagcattttgacagcaacctcagtatcatggtcaatccagccg |
266 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||| |
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| T |
43175582 |
aattaatgatactacctctgcttgaaattgcagatatccttgagctgatgaggaagatagcattttgacagctacctcggtattatgatcaatccagcca |
43175483 |
T |
|
| Q |
267 |
tggtagactgttccagatgctcctttccccaaaaccgtcttaaagtttctggtaattctgtatacttcttcatagcggaattcttg |
352 |
Q |
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||||||||||||||||||||||||||||||| |||| | | ||||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
43175482 |
tggtagactgttccagatgctcctttccccacaaccttttcaaagtttctggtaatgcttaatacttcttcatagctgaattcttg |
43175397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 43175741 - 43175653
Alignment:
| Q |
11 |
catcatcacagtaacctataagactggtcaagtatttatgatgaactgtagcaaaaaatttggcctatgaatcacaaaggaaaaccata |
99 |
Q |
| |
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|||||||||| | |||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||| |
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| T |
43175741 |
catcatcacaaaaccctataagacctgtcaagtatttatgatgaaccacagcaaaaagtttggcctgtgaatcagaaaggaaaaccata |
43175653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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