View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14946_low_4 (Length: 384)
Name: NF14946_low_4
Description: NF14946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14946_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 1335764 - 1336119
Alignment:
| Q |
17 |
atcttacacgtttaaaaagtaaaatatgttagttttatgacttgacattttgtcnnnnnnnnnttgaaatggatttttatcgccccatagataaagtcca |
116 |
Q |
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| T |
1335764 |
atcttacacgtttaaaaagtaaaatatgttagttttatgacttgacattttgtcaaaaaaaaattgaaatggatttttatcgccccatagataaagtcca |
1335863 |
T |
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| Q |
117 |
aaatagatttcagaaccatatcaactaaatagatttcaaacatgaaataatcaaccgaaaaaataaaagatgggcagtataaccgattataataccaacc |
216 |
Q |
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| T |
1335864 |
aaatagatttcagaaccatatcaactaaatagatttcaaacatgaaataatcaaccgaaaaaataaaagatgggcagtataaccgattataataccaacc |
1335963 |
T |
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| Q |
217 |
ttttcaaaaacacaaattacagtgcttccaccgaaagcaaaatatccaaactgtcaatcaaagcaaacaagtgccaataagaaacaaggacatgaagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1335964 |
ttttcaaaaacacaaattacagtgcttccaccgaaagcaaaatatccaaactgtcaatcaaagcaaacaagtgccaataagaaacaaggacatgaagaaa |
1336063 |
T |
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| Q |
317 |
attggaaaaacagtaatttactgtaactggctggattccaaacctcatctcccttc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1336064 |
attggaaaaacagtaatttactgtaactggctggattccaaacctcatctcccttc |
1336119 |
T |
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