View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14946_low_8 (Length: 267)
Name: NF14946_low_8
Description: NF14946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14946_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 20649021 - 20648763
Alignment:
| Q |
1 |
tggtgatgattcccctattgctttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtagga |
100 |
Q |
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| T |
20649021 |
tggtgatgattcccctattcctttagttggccacgatacaaaagttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtagga |
20648922 |
T |
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| Q |
101 |
ggggaacaaattctaccgaaatttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaata |
200 |
Q |
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| T |
20648921 |
ggggaacaaattctaccgaaatatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttggggtagatgaaattaaacccttcaata |
20648822 |
T |
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| Q |
201 |
agagcattgaagttttgtatactgatcatgttcccgagtatactgctcctgatgatgtc |
259 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20648821 |
ggagcatgaaagttttgtatactgatcatgttccggagtatactgctcctgatgatgtc |
20648763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 20632922 - 20632667
Alignment:
| Q |
1 |
tggtgatgattcccctattgctttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtagga |
100 |
Q |
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||||||||||||||||||| |||| | |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632922 |
tggtgatgattcccctattcctttcgctggccacgatacaa---ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtagga |
20632826 |
T |
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| Q |
101 |
ggggaacaaattctaccgaaatttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaata |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| |||||||| |
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| T |
20632825 |
ggggaacaaattctaccgaaatatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttgggggatatgattttaaacacttcaata |
20632726 |
T |
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| Q |
201 |
agagcattgaagttttgtatactgatcatgttcccgagtatactgctcctgatgatgtc |
259 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20632725 |
agagcatgaaagttttgtatactgatcatgttccggagtatactgctcctgatgatgtc |
20632667 |
T |
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