View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14947_high_3 (Length: 475)
Name: NF14947_high_3
Description: NF14947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14947_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 1703165 - 1703616
Alignment:
| Q |
11 |
cacagacaaaatcatttcacatttaaatatatttaagaaaaattaaaataaaattacgacataatattgaatgatgcgtatatatctaacgaaagtggac |
110 |
Q |
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| T |
1703165 |
cacaaacaaaatcatttcacatttaaatatatttaagaaaaattaaaataaaattacgacataatattgaatgatgtgtatatatctaacgaaagtggac |
1703264 |
T |
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| Q |
111 |
actagagtgttcaccaaaatgaaatatggatgaaaaacagagaaagaagtttacgctggtgagaaaaacaagccaaaagagatgacattgcctgcaacaa |
210 |
Q |
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| T |
1703265 |
actagagtgttcaccaaaatgaaatatggatgaaaaacagagaaagaagtttacgctggtgagaaaaacaagccaaaagagatgacattgcctgcaacaa |
1703364 |
T |
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| Q |
211 |
c-aaaaaatagagcaaaaattattac----------taataacaacattttatgtgaaatgaatcaaactatacacgttggagtattgttttaattttat |
299 |
Q |
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| T |
1703365 |
caaaaaaatagagcaaaaattattactctaataacataataacaacattttatgtgaaatgaatcaaactatacacgttggagtattgttttaattttat |
1703464 |
T |
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| Q |
300 |
tataa-nnnnnnncaattttcatgcaaaaactaatatgaaaagtatagtnnnnnnncattgagatgaaagtgaaacacaaacctatggcaccaacaacgt |
398 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1703465 |
tataattttttttcaattttcatgcaaaaactaatatgaaaagtatagtaaaaaaacattgagatgaaagtgaaacacaaacctatggcaccaacaacgt |
1703564 |
T |
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| Q |
399 |
tacgagctaatttggctgtcacaaccatgttggaaatttttgttctgcagag |
450 |
Q |
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| T |
1703565 |
tacgagctaatttggctgtcacaaccatgttggaaatttttgttctgcagag |
1703616 |
T |
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