View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14947_low_2 (Length: 502)

Name: NF14947_low_2
Description: NF14947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14947_low_2
NF14947_low_2
[»] chr1 (6 HSPs)
chr1 (1-487)||(47540024-47540513)
chr1 (1-173)||(47541310-47541484)
chr1 (4-172)||(47547499-47547670)
chr1 (314-391)||(47546673-47546750)
chr1 (181-265)||(47539063-47539147)
chr1 (208-282)||(47546540-47546614)


Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 47540024 - 47540513
Alignment:
Q  1 tttaagttagaagaaaacaatgaacaagtcggtaacactttggaatggcaatggtaccgttcggagatcacgtagtaaggacaatatccttgtattgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  47540024 tttaagttagaagaaaacaatgaacaagtcggtaacactttggaatggcaatggtaccgttcggagagcacgtagtaaggacaatatccttgtcttgaag 47540123  T
Q  101 tgtgacattgccactcatatccctatcacccaaacactgttcctttcctagaaaggctcctctgcaactat---atatacgagttgagaatcttgcattg 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||    
T  47540124 tgtgacattgccactcatatccctatcacccaaacactgttcctttcctagaaaggctcctctgcaactattatatatacgagttgagaatcttacattg 47540223  T
Q  198 tggcaataacaagaacttttttagggtcaagtagtcaggaagaagaacgtccaaaactacttctccatcttatacatttgttttcatttgtggtgttaca 297  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47540224 tggcaatgacaagaacttttttagggtcaagtagtcaggaagaagaacgtccaaaactacttctccatcttatacatttgttttcatttgtggtgttaca 47540323  T
Q  298 catgtgatgcactagctgtgggtttgttgaattctgtgtggaccctaccgctaccaccgttgaattgcaagatcctaacagagcatctacagttgaaact 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47540324 catgtgatgcactagctgtgggtttgttgaattctgtgtggaccctaccgctaccaccgttgaattgcaagatcctaacagagcatctacagttgaaact 47540423  T
Q  398 cataatcaatagaagtatgtacattgcaagttcacaacaataatgtccagannnnnnnataattgacagtacatgtggcccccaagtata 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  47540424 cataatcaatagaagtatgtacattgcaagttcacaacaataatgtccagatttttttataattgacagtacatgtggcccccaagtata 47540513  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 47541310 - 47541484
Alignment:
Q  1 tttaagttagaagaaaacaatgaacaagtcggtaacactttggaatggcaatggtaccgttcggagatcacgtagtaaggacaatatccttgtattgaag 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   |||||||| || |||||||||||| ||||||||| ||||||    
T  47541310 tttaagttagaagaaaacaatgaacaagtcggtaaaactttggaattgcaatggtattattcggagaccatgtagtaaggacagtatccttgtcttgaag 47541409  T
Q  101 tgtgacattgccactcatatccctatcacccaaacac--tgttcctttcctagaaaggctcctctgcaactatat 173  Q
    ||||||||||||||||| || |||||||||| |||||  ||||||| ||||||||||||||||||||||||||||    
T  47541410 tgtgacattgccactcacattcctatcaccccaacactgtgttcctgtcctagaaaggctcctctgcaactatat 47541484  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 47547499 - 47547670
Alignment:
Q  4 aagttagaagaaaacaatgaacaag-tcggtaacactttggaatggcaatggtaccgttcggagatcacgtagtaaggacaatatccttgtattgaagtg 102  Q
    |||||||||||||||||||||| || ||||||||||||||||| || ||| ||||| |||||||| || |||||| ||||||||||||||| ||||||||    
T  47547499 aagttagaagaaaacaatgaacgaggtcggtaacactttggaagggaaatagtacctttcggagaacatgtagtagggacaatatccttgtcttgaagtg 47547598  T
Q  103 tgacattgccactcatatccctatcacccaaacact--gttcctttcctagaaaggctcctctgcaactata 172  Q
    ||||||||||||||| ||  |||||||||  || ||  | ||||||||| || ||||||| |||||||||||    
T  47547599 tgacattgccactcacatttctatcacccccacgctgggatcctttcctggataggctccgctgcaactata 47547670  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 47546673 - 47546750
Alignment:
Q  314 tgtgggtttgttgaattctgtgtggaccctaccgctaccaccgttgaattgcaagatcctaacagagcatctacagtt 391  Q
    ||||| ||||||||||||||||||||||| || | |||||||||||| ||||| ||||||||||||||  ||||||||    
T  47546673 tgtggatttgttgaattctgtgtggaccccactggtaccaccgttgacttgcatgatcctaacagagccgctacagtt 47546750  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 47539063 - 47539147
Alignment:
Q  181 ttgagaatcttgcattgtggcaataacaagaacttttttagggtcaagtagtcaggaagaagaacgtccaaaactacttctccat 265  Q
    ||||||||| | ||||||||||| ||| |||||||||||||||||||||||  ||||  ||||| ||| ||||||||||||||||    
T  47539063 ttgagaatcatacattgtggcaaaaacgagaacttttttagggtcaagtagctaggagaaagaaggtctaaaactacttctccat 47539147  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 47546540 - 47546614
Alignment:
Q  208 aagaacttttttagggtcaagtagtcaggaagaagaacgtccaaaactacttctccatcttatacatttgttttc 282  Q
    ||||||||||||||||||||| || || |||||||| ||||||||||||||||| | | ||||| ||||||||||    
T  47546540 aagaacttttttagggtcaagaagccatgaagaagatcgtccaaaactacttcttcttgttatagatttgttttc 47546614  T

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