View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14947_low_4 (Length: 423)
Name: NF14947_low_4
Description: NF14947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14947_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 45284601 - 45284206
Alignment:
| Q |
19 |
caattcactcaaaacatgtgaaagttggtcccgaacttttacagtttctaatctaagatcagccatctctttcatcattgattcaagctcgtctttgcta |
118 |
Q |
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| T |
45284601 |
caattcactcaaaacatgtgaaagttggtcccgaacttttacagtttctaatctaagatcagccatctctttcatcattgattcaagctcgtctttgcta |
45284502 |
T |
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| Q |
119 |
ctagctctaccctctgaatgttcgttcacatacttgtttctttcaatatcagagtttttcaacaaggtagacaattcctgaatcatcttttggttttgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284501 |
ctagctctaccctctgaatgttcgttcacatacttgtttctttcaatatcagagtttttcaacaaggtagacaattcctgaatcatcttttggttttgtt |
45284402 |
T |
|
| Q |
219 |
ccggcttaagaagtgctttgatgtgtgcaacatgctttgcttctaattgcaccttgtagctggccaattccgttgtcaaatcctcaatctctttttcata |
318 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284401 |
ctggcttaagaagtgctttgatgtgtgcaacatgctttgcttctaattgcaccttgtagctggccaattccgttgtcaaatcctcaatctctttttcata |
45284302 |
T |
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| Q |
319 |
gtcacgctggcatacaaataaaagtgtaacaataatgacataaaaatcatgaattaattagatatctatctatgtatatagtccaattagtattat |
414 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45284301 |
gtcacgctggcatacaaataaaagtgtgacaataatgacataaaaatcatgaattaattagatatctatctatgtatatagtccaattagtattat |
45284206 |
T |
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