View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14947_low_5 (Length: 327)

Name: NF14947_low_5
Description: NF14947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14947_low_5
NF14947_low_5
[»] chr4 (5 HSPs)
chr4 (1-63)||(15039832-15039894)
chr4 (1-63)||(15041561-15041623)
chr4 (1-63)||(15112801-15112863)
chr4 (1-63)||(15114530-15114592)
chr4 (1-64)||(16003633-16003696)
[»] chr6 (2 HSPs)
chr6 (1-63)||(13213937-13213999)
chr6 (1-63)||(34245076-34245138)
[»] chr1 (2 HSPs)
chr1 (138-235)||(18644050-18644147)
chr1 (7-57)||(17309720-17309770)
[»] chr7 (3 HSPs)
chr7 (1-63)||(10868119-10868181)
chr7 (1-63)||(20186240-20186302)
chr7 (3-63)||(10866403-10866463)
[»] chr5 (1 HSPs)
chr5 (3-63)||(33566692-33566752)
[»] chr3 (2 HSPs)
chr3 (1-63)||(8584528-8584590)
chr3 (1-59)||(19844661-19844719)
[»] chr8 (2 HSPs)
chr8 (1-64)||(22692532-22692593)
chr8 (1-61)||(30187685-30187745)
[»] scaffold0590 (1 HSPs)
scaffold0590 (2-56)||(75-129)
[»] scaffold0275 (1 HSPs)
scaffold0275 (2-56)||(3846-3900)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15039894 - 15039832
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15039894 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15039832  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15041623 - 15041561
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15041623 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15041561  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15112801 - 15112863
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15112801 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15112863  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15114530 - 15114592
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15114530 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15114592  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16003633 - 16003696
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgataa 64  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  16003633 cctatcaattatacttttcctatgaagttaatctcaatctctttgatcctattatttctgataa 16003696  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13213999 - 13213937
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13213999 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttgtgata 13213937  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34245076 - 34245138
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    ||||||||||||||||||||||| ||||||||||  |||| || |||||||||||||||||||    
T  34245076 cctatcaatcatacttctcctataaagctaatctacatctattcgatcctattatttctgata 34245138  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 18644050 - 18644147
Alignment:
Q  138 atggtaaagcggaagtggtggcagcggatgttcagtctttaggtaaggttatgggggtgaaatatcagtgtgacacagggaatagttttaatttgttg 235  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||   |||||| ||||||||||||    
T  18644050 atggtaaagcggatgttgtggcagcggatgttcagtctttaggtaaggtagtgggggtgaaatatcaatgtgatactttgaatagctttaatttgttg 18644147  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 17309770 - 17309720
Alignment:
Q  7 aatcatacttctcctatgaagctaatctcaatctctttgatcctattattt 57  Q
    ||||||||||||||||||||||||||||  || |||| |||||||||||||    
T  17309770 aatcatacttctcctatgaagctaatcttcatttcttcgatcctattattt 17309720  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10868119 - 10868181
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  10868119 cctatcaatcatacttctcttctgaagttaatctcaatctctttgatcctattatttctgata 10868181  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20186240 - 20186302
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  20186240 cctatcaatcatacttctcctatgaggctaatctcaatcttttcgatcctattatttctgata 20186302  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 10866403 - 10866463
Alignment:
Q  3 tatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  10866403 tatcaatcatacttcttttatgaagttaatctcaatctctttgatcctattatttctgata 10866463  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 33566752 - 33566692
Alignment:
Q  3 tatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  33566752 tatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgata 33566692  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8584528 - 8584590
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 63  Q
    |||||||||||||||| || |||||||||||||||||||| || ||| |||||||||||||||    
T  8584528 cctatcaatcatacttatcttatgaagctaatctcaatctattcgatactattatttctgata 8584590  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19844719 - 19844661
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttct 59  Q
    ||||||| |||||||||| ||||||| ||||||||||||| || |||||||||||||||    
T  19844719 cctatcactcatacttctgctatgaaactaatctcaatctattcgatcctattatttct 19844661  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22692532 - 22692593
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgataa 64  Q
    ||||||||||||||||||||||| |||||||||||||||| || ||||  ||||||||||||||    
T  22692532 cctatcaatcatacttctcctataaagctaatctcaatctattcgatc--attatttctgataa 22692593  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30187745 - 30187685
Alignment:
Q  1 cctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctga 61  Q
    ||||||||||||||||||| || |||||||||||||| ||  | |||||||||||||||||    
T  30187745 cctatcaatcatacttctcttacgaagctaatctcaacctaatcgatcctattatttctga 30187685  T

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Target: scaffold0590 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 75 - 129
Alignment:
Q  2 ctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatt 56  Q
    |||||||||||||||||||||||||||||||||  |||| || ||||||||||||    
T  75 ctatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 129  T

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Target: scaffold0275 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 3900 - 3846
Alignment:
Q  2 ctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatt 56  Q
    |||||||||||||||||||||||||||||||||  |||| || ||||||||||||    
T  3900 ctatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 3846  T

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