View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14947_low_6 (Length: 273)
Name: NF14947_low_6
Description: NF14947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14947_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 41962491 - 41962746
Alignment:
| Q |
1 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacacccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962491 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcagcccaccactttctccaccggtgctatcatctacaaacacccca |
41962590 |
T |
|
| Q |
101 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962591 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
41962690 |
T |
|
| Q |
201 |
tgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962691 |
tgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttg |
41962746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1223965 - 1224220
Alignment:
| Q |
1 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacacccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1223965 |
ctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttctccaccggtgctatcatctacaaacacccca |
1224064 |
T |
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| Q |
101 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224065 |
tttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatcccacttcctttggtgatggcat |
1224164 |
T |
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| Q |
201 |
tgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttg |
256 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224165 |
tgttttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttg |
1224220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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