View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14947_low_9 (Length: 237)
Name: NF14947_low_9
Description: NF14947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14947_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47539999 - 47539779
Alignment:
| Q |
1 |
aggatttggatcatcttcgtttgaattttttggatgtcacatggccatttaacgaaaaatttgtgcataagaacaaaaatatgcatgaaagaatctaaat |
100 |
Q |
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| T |
47539999 |
aggatttggatcatcttcgtttgaattttttggatgtcacatggccatttaaagaaaaatttgtgcataagaacaaaaatatgcatgaaagaatctaaat |
47539900 |
T |
|
| Q |
101 |
atatttttgtttttatcttaaagatctggaccaatctactcgcctagttgggattttgttttcatgcatgtcttcttcagtggaaaaaagttttgtgtaa |
200 |
Q |
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| T |
47539899 |
atatttttgtttttatcttaaagatctggaccaatctactcgcctagttgggattttgttttcatgcatgtcttcttcagtggaaaaaagttttatgtaa |
47539800 |
T |
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| Q |
201 |
ttatcaaccttaggtgtgttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47539799 |
ttatcaaccttaggtgtgttt |
47539779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47541285 - 47541069
Alignment:
| Q |
1 |
aggatttggatcatcttcgtttgaattttttggatgtcacatggccatttaacgaaaaatttgtgcataagaacaaaaatatgcatgaaagaatctaaat |
100 |
Q |
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|
|||||||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||| |
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| T |
47541285 |
aggatttggatcatcttcgtttgagtttttttgat--cacatggtcatttaaagaaaaatctgtgcataagtacaaaaatatgcatgaaagaatccaaat |
47541188 |
T |
|
| Q |
101 |
atatttttgtttttatcttaaagatctggaccaatctactcgcctagttgggattttgttttcatgcatgtcttcttcagtggaaaaaagttttgtgtaa |
200 |
Q |
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|||||||||||||||||||| ||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| | ||| ||||| |
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| T |
47541187 |
atatttttgtttttatcttataga-ccggaccaatctactcgcctacttgcgattttgttttcatgcatgtcttcttcagttgaaaaacg-tttatgtaa |
47541090 |
T |
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| Q |
201 |
ttatcaaccttaggtgtgttt |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
47541089 |
ttatcaactttaggtgtgttt |
47541069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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