View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_high_1 (Length: 508)
Name: NF14948_high_1
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 211 - 502
Target Start/End: Original strand, 36527507 - 36527787
Alignment:
| Q |
211 |
tctaagaaatattgtatgtaatttactatggtnnnnnnnntcaacatgtgcttacacactaatttgatgattaagaaatagacattgagaagagtcatac |
310 |
Q |
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| T |
36527507 |
tctaagaaaaattgtatgtaatttactatggtaaaaaaaatcaacatgtgcttacatactgatttgatgattaagaaatagacattgagaacagtcatac |
36527606 |
T |
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| Q |
311 |
ataaatgtatagaaaattgcacacaaatgaaagacaaaccgtcaacaagctgcaccattaacnnnnnnncatttgctaaaaacaggggattaaactaaac |
410 |
Q |
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| T |
36527607 |
ataaatgtatagaaaattgcacacaaatgaaagacaaac-----------tgcgccagtaactctttttcatttgctaaaaactggggattaaactaaac |
36527695 |
T |
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| Q |
411 |
aatatcttttacactatttgatttaaaatttggtcacgggactgtacaaaacaggtaataaggaattggacctatacaataattcttctctc |
502 |
Q |
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| T |
36527696 |
aattttttttacactatttgatttaaaatttggtcacgggactgcacaaaacaggtaacaaggaattggacctctacaataattcttctctc |
36527787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 36526584 - 36526785
Alignment:
| Q |
17 |
acaaacagtgaacgatgtaaacgtatggaactctgacatgttcgcaaggttgcataattgtatcgagttaatcacatttggattctttgaatcatgtatt |
116 |
Q |
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| T |
36526584 |
acaaacagtgaacgatgtaaacgtatggaactctgacatgttcgcatggtcgcataattgtatcgagttaatctcatttggattctttgaatcatgtatt |
36526683 |
T |
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| Q |
117 |
agattag---------atgtgatctcaaaaaagatttaacaagtgagggacatatctcacttataaaccatttttgtaaagttaacttcaacttaactta |
207 |
Q |
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| T |
36526684 |
agatgagatgtgaatcatgtgatctcaaaaaagatttaacaagt--------tatctcacttataaaccatttttgtaaagttaacttcaacttaactta |
36526775 |
T |
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| Q |
208 |
aattctaaga |
217 |
Q |
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| T |
36526776 |
aattctaaga |
36526785 |
T |
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