View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_high_12 (Length: 227)
Name: NF14948_high_12
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 16620351 - 16620565
Alignment:
| Q |
6 |
agtaacttcctcaacagtttgaatgcaatgtagcaaactttgcatgttcaaacgaagtagtttaggttagattcatgaaatgtcnnnnnnnntaaaatta |
105 |
Q |
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| T |
16620351 |
agtaacttcctcaacagtttgaatgcaatgtagcaaactttgcatgttcaaacgaagtagtttaggttagattcatgaaatgtaaaaaa----aaaatga |
16620446 |
T |
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| Q |
106 |
acaaagattatatagaacatgaattaatcaatgattgaatttcatagctagaaaaataaattagttattgcaactgcttgaaaattttgattttacatga |
205 |
Q |
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| T |
16620447 |
acaaagattatatagaacatgaattaatcaatgattgaatttcatatctagaaaaataaattagttattgtaactgcatgaaaattttgattttacatga |
16620546 |
T |
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| Q |
206 |
ttacaacaaaattgaaaaaaca |
227 |
Q |
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| T |
16620547 |
tt---acaaaattgaaaaaaca |
16620565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 4794112 - 4794262
Alignment:
| Q |
55 |
aaacgaagtagtttaggttagattcatgaaatgtcnnnnnnnntaaaattaacaaagattatatagaacatgaattaatcaatgattgaatttcatagct |
154 |
Q |
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| T |
4794112 |
aaacgaagtagtttaggttagattaatgaaatgtcaaaaaaa--aaaatgaacaaagatta----gaacaagaattaatcaatgattcaatttcatacct |
4794205 |
T |
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| Q |
155 |
agaaaaataaattagttattgcaactgcttgaaaattttgattttacatgattacaa |
211 |
Q |
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| T |
4794206 |
agaaaaataaattatttattgtaaccgcgcgaaaattttgattttacatgattacaa |
4794262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 4793969 - 4794001
Alignment:
| Q |
7 |
gtaacttcctcaacagtttgaatgcaatgtagc |
39 |
Q |
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| T |
4793969 |
gtaacttcttcaacagtttgaatgcaatgtagc |
4794001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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