View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_high_3 (Length: 409)
Name: NF14948_high_3
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 393
Target Start/End: Original strand, 6455395 - 6455783
Alignment:
| Q |
5 |
aagaacaccatgtggcttctggaaatcgacatgaaaccctaacgtacacatcacgggtcgtggcaaaccctaatttatgtatggaaagcacgtggtacat |
104 |
Q |
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| T |
6455395 |
aagaacaccatgtggcttctggaaatcgacatgaaaccctaacgtacacatcacgggtcgtggcaaaccctaatttatgtatggaatgcacgtggtacat |
6455494 |
T |
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| Q |
105 |
caaagaaccatagcttaataaaccacttttccaccgttggattaggtacctcacgtgccgttttagtaccgtggcaaagatgtaatggatggtaattatt |
204 |
Q |
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| T |
6455495 |
caaagaaccatagcttaataaaccacttttccaccgttggattaggtacctcacgtgccgttttagtaccgtggcaaagatctaatggatggcaattatt |
6455594 |
T |
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| Q |
205 |
tccggtgtttgcggtttaataaaccaagatgtgtcgctatagaaagtgaaacattgtttgtannnnnnngcaacacaaatggtactatctcaatggttgt |
304 |
Q |
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| T |
6455595 |
tccggtgtttgcggtttaataaaccaagatgtgtcgctatagaaagtgaaacattgtttgtatttttttgcaacacaaatggtactatctcaatggttgt |
6455694 |
T |
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| Q |
305 |
cgttttgtttaagaaactaagagacgtggcgattcttcaaataattttctaaagaatgatgataactttatgaatttaaataacattta |
393 |
Q |
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| T |
6455695 |
cgttttgtttaagaaactaagagacgtggcgattcttcaaataattttctaaagaatgatgataactttatgaatttagataacattta |
6455783 |
T |
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