View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_high_4 (Length: 361)
Name: NF14948_high_4
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 345
Target Start/End: Complemental strand, 28585974 - 28585634
Alignment:
| Q |
5 |
aattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585974 |
aattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttca |
28585875 |
T |
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| Q |
105 |
gaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacacaggcatgacatatata |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28585874 |
gaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacacaggcatgacatatata |
28585775 |
T |
|
| Q |
205 |
aagacgattctgagtggaaaaattggaaaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatc |
304 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28585774 |
aagacgattctgagtggaaaaattggaaaaagataggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcatttctcccttatc |
28585675 |
T |
|
| Q |
305 |
agcacatactctttctaaggtaatcgatccgaacagttctt |
345 |
Q |
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||||||||||||||||||||||||| |||| ||||| |||| |
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| T |
28585674 |
agcacatactctttctaaggtaatcaatcccaacagctctt |
28585634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 28403822 - 28404131
Alignment:
| Q |
5 |
aattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403822 |
aattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttca |
28403921 |
T |
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| Q |
105 |
gaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacacaggcatgacatatata |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28403922 |
gaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacacaggcatgacatatata |
28404021 |
T |
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| Q |
205 |
aagacgattctgagtggaaaaattggaaaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatc |
304 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28404022 |
aagacgattctgagtggaaaaattggaaaaagataggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatc |
28404121 |
T |
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| Q |
305 |
agcacatact |
314 |
Q |
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|||||||||| |
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| T |
28404122 |
agcacatact |
28404131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 26 - 314
Target Start/End: Original strand, 28417400 - 28417679
Alignment:
| Q |
26 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagtaagagca |
125 |
Q |
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|||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||| ||| |
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| T |
28417400 |
gaggaagcctcggattgtacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagct |
28417499 |
T |
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| Q |
126 |
gttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacacaggcatgacatatataaagacgattctgagtggaaaa |
225 |
Q |
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||||| ||| ||||| |||| |||||||||| | |||||||||||||||| ||||| | | |||| |||||| ||| ||||||| |
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| T |
28417500 |
gttgtcacaaaaacagctttacaatttcttgctaatgagaaagcagaatcaatgttc---------gaagtaatattctgcgacgatcatgactggaaaa |
28417590 |
T |
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| Q |
226 |
attggaaaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatact |
314 |
Q |
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|| |||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
28417591 |
ataggaaaaagataggtgattctgtgcttcacattgagcttgctaagtgggctgatatcatcgtcattgctcccttatcagcacatact |
28417679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 28580672 - 28580575
Alignment:
| Q |
232 |
aaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctttctaaggtaatc |
329 |
Q |
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||||||| |||||||||||||||| |||||| ||||| | ||||||||||||||||| ||||||||||||||||||| ||| | || | ||||||||| |
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| T |
28580672 |
aaaagataggtgattctgtgcttcccattgagcttgcaagttgggctgacatcatggacattgctcccttatcagcagatattgttgccaaggtaatc |
28580575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 28419851 - 28419944
Alignment:
| Q |
26 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
119 |
Q |
| |
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|||||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||| ||| || ||||||| ||||||||||||||| |
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| T |
28419851 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28419944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 28582339 - 28582246
Alignment:
| Q |
26 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
119 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||| ||| || ||||||| ||||||||||||||| |
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| T |
28582339 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28582246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 28420067 - 28420142
Alignment:
| Q |
254 |
tcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctttctaaggtaatc |
329 |
Q |
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||||||| | ||||| ||||||||||| ||| || |||||||||||||||| || ||||||||| | ||||||||| |
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| T |
28420067 |
tcacattaagcttgcgaattgggctgatatcttgctcattgctcccttatctgctcatactcttgccaaggtaatc |
28420142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 28582123 - 28582048
Alignment:
| Q |
254 |
tcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctttctaaggtaatc |
329 |
Q |
| |
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||||||| | ||||| ||||||||||| ||| || |||||||||||||||| || ||||||||| | ||||||||| |
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| T |
28582123 |
tcacattaagcttgcgaattgggctgatatcttgctcattgctcccttatctgctcatactcttgccaaggtaatc |
28582048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 12984829 - 12984760
Alignment:
| Q |
248 |
tgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctt |
317 |
Q |
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||||||||||||||| ||| || |||||||| ||||||||||||||||| || |||||| | |||||| |
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| T |
12984829 |
tgtgcttcacattgagcttcgcaaatgggctgatatcatggtcattgctccattgtcagcaaacactctt |
12984760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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