View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_high_5 (Length: 323)
Name: NF14948_high_5
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 51936853 - 51937151
Alignment:
| Q |
15 |
aatatcgatatctgctacatgtacaaacggatgtgttccctatttggacttcatagataatgggataatgatctggttatggcctaaggttgtcctgaca |
114 |
Q |
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| T |
51936853 |
aatatcgatatctgctacatgtacaaacggatgtgttccctatttggacttcatagataatg--------atctggttatggcctaaggttgtcctgaca |
51936944 |
T |
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| Q |
115 |
gaaaacctgcaatatgcatctacatgcagctggaatggataaagcaaaatttgatagcacaattgnnnnnnnnnnnnnnnnnntgtagtagaggtgagac |
214 |
Q |
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| T |
51936945 |
gaaaacctgcaatatgcatctacatgcagctggaatggataaagcacaatttgatagcacaattgaaaaaaaaaataaaaa--tgtagtagaggtgagac |
51937042 |
T |
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| Q |
215 |
taattgaaaggaaatttctttgaaggactaattgaaagtaaattgttataagtaccaccaacattgagaaaaaggttcaaattgcggtcgtagctaaaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51937043 |
taattgaaaggaaatttctttgaaggactaattgaaagtaaattgttataagtaccaccaacattgagaaaaaggttcaaattgcggtcgtagcaaaaac |
51937142 |
T |
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