View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_low_2 (Length: 435)
Name: NF14948_low_2
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 29533873 - 29533691
Alignment:
| Q |
16 |
aaaggaacagtgatttcagtaataacaacaccccaaaagcataattgacctaggaaaacaaaaaggaatgtaatgctttatgaaattttggtgaatctgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29533873 |
aaaggaacagtgatttcagtaataacaacaccccaaaagcatgaatgacctaggaaaacaaaaaggaatgtaacgctttatgaaattttggtgaatctgc |
29533774 |
T |
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| Q |
116 |
gtatgatcaaatattgaatgtttcaaatcaacatgattttcagaaattaactacacgtgattaaaacttcaacttcataccct |
198 |
Q |
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| T |
29533773 |
gtatgatcaaatattgaatgtttcaaatcaacatgattttcagaaattaactacacgtgattaaaactccaacttcataccct |
29533691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 269 - 435
Target Start/End: Complemental strand, 29533592 - 29533424
Alignment:
| Q |
269 |
gcgtagaccaatgctagatttgaatccaatataaaaaagactcgtgtcatctcatctaaacgatcttacataaacata--aagatttgattcttatatag |
366 |
Q |
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||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
29533592 |
gcgtagaccgatgctagatttaaatccaatataaaagagactcgtgtcatttcatctaaacgatcttatgtaaacatacgaagatttgattcttatatcg |
29533493 |
T |
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| Q |
367 |
ttggaggtttgcatgcattttagatatgcttataatatatgaatatgaatgaactatatgggatataaa |
435 |
Q |
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| T |
29533492 |
ttggaggtttgcatgcattttagatatgcttataatatatgaatatgaatgaactatatgggatataaa |
29533424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 39401192 - 39401227
Alignment:
| Q |
300 |
taaaaaagactcgtgtcatctcatctaaacgatctt |
335 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
39401192 |
taaaaaagactcgtgtcatctcatctaaacgttctt |
39401227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 29597491 - 29597455
Alignment:
| Q |
300 |
taaaaaagactcgtgtcatctcatctaaacgatctta |
336 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |
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| T |
29597491 |
taaaaaaaactcgtgtcatctcatctaaacgctctta |
29597455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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