View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_low_8 (Length: 304)
Name: NF14948_low_8
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 4590738 - 4591010
Alignment:
| Q |
17 |
gaacaaaatagaacattagagataaggttaaaagaatgtggcgatgacattctcaggttagataaagtgatttgtgctagctatggtgggagcaacaaca |
116 |
Q |
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| T |
4590738 |
gaacaaaatagaacattagatataaggttaaaagaatgtggcgatgacattctcaggttagataaagtgatttgtgctagctatggtgggagcaacaaca |
4590837 |
T |
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| Q |
117 |
acatctgcgaaacaacagaatcacaagaattagccaaaataatgttggtggatggttgttttttgttggagtttctttttaagcttgacaagtacatgga |
216 |
Q |
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| T |
4590838 |
acatctgcgaaacaacagaatcacaagaattagccaaaataatgttggtggatggttgttttttgttggagtttctttttaagcttgacaagtacatgga |
4590937 |
T |
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| Q |
217 |
agacgaatattattataacaatgattcaatctttaaagccgaggataaggtgttactgttatctgttttaaac |
289 |
Q |
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| T |
4590938 |
agacgaaaattattataacaatgattcaatctttaaagccgaggataaggtgttactgttatctgttttaaac |
4591010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 4554488 - 4554548
Alignment:
| Q |
61 |
tgacattctcaggttagataaagtgatttgtgctagctatggtgggagcaacaacaacatc |
121 |
Q |
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| T |
4554488 |
tgacattcttaagttagataaagtgatttgtgctagctatggtgggagcaacaacaacatc |
4554548 |
T |
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