View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14948_low_9 (Length: 271)
Name: NF14948_low_9
Description: NF14948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14948_low_9 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 364315 - 364520
Alignment:
| Q |
18 |
agttcaagacacatcatatcttctagtaattttatagttcaatacctttgtcttatttaattaccccattcacctatatttaccatgttttcatgaacac |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
364315 |
agttcaagacacctcatatcttctagtaattttatagttcaatacctttgtcttatttaattaccccattcacctatatttaccatgttttcatgaacac |
364414 |
T |
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| Q |
118 |
cgaagaaaaataaaagctaggattcataagtataataaatactcaaaatgaagaccatagaaaagggcatgttcatatctacaaaacactaaacacttga |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
364415 |
cgaagaaaaataaaagttaggattcataagtataataaatactcaaaatgaagaccata-aaaagggcatgttcatatctacaaaacactaaacacatgt |
364513 |
T |
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| Q |
218 |
taactat |
224 |
Q |
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||||||| |
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| T |
364514 |
taactat |
364520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 6100478 - 6100276
Alignment:
| Q |
18 |
agttcaagacacatcatatcttctagtaattttatagttcaatacctttgtcttatttaattaccccattcacctatatttaccatgttttcatgaacac |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6100478 |
agttcaagacacctcatatcttctagtaattttatagttcaatacctttgtcttattta----ccccattcacctatatttaccatgttttcatgaacac |
6100383 |
T |
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| Q |
118 |
cgaagaaaaataaaagctaggattcataagtataataaatactcaaaatgaagaccatagaaaagggcatgttcatatctacaaaacactaaacacttga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||| |
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| T |
6100382 |
tgaagaaaaataaaagctaggattcataagtataataaatactcaaaatgaagaccgtagaaaaaggcatgttcatatctacaaagcactaaacacatga |
6100283 |
T |
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| Q |
218 |
taactat |
224 |
Q |
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||||||| |
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| T |
6100282 |
taactat |
6100276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 1521661 - 1521703
Alignment:
| Q |
223 |
atctcttataatacaagaaaggagtgcacactgaaccagagct |
265 |
Q |
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||||||||||||| |||||||||||||||||| ||||| |||| |
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| T |
1521661 |
atctcttataatataagaaaggagtgcacactcaaccacagct |
1521703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 28055351 - 28055395
Alignment:
| Q |
18 |
agttcaagacacatcatatcttctagtaattttatagttcaatac |
62 |
Q |
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|||||||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
28055351 |
agttcaagacacctcatatcttatagtgattttatagttcaatac |
28055395 |
T |
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