View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_high_16 (Length: 219)
Name: NF14949_high_16
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 55978229 - 55978416
Alignment:
| Q |
16 |
caaaggttgattttaagagttatggtgttgacaacactttcaaagagtattctaaagaaggtatttcttttacaaagtacacaaacgcgagtttgagttt |
115 |
Q |
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| T |
55978229 |
caaaggttgattttaagggttatggtgttgacaacactttcaaagagtattctaaagaaggtgtttcttttgcaaagtacacaaacgcgagtttgagttt |
55978328 |
T |
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| Q |
116 |
aagtgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaac |
203 |
Q |
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| T |
55978329 |
aaatgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagttttttcgggaaaac |
55978416 |
T |
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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 14865902 - 14866080
Alignment:
| Q |
16 |
caaaggttgattttaagagttatggtgttgacaacactttcaaagagtattctaaagaaggtatttcttttacaaagtacacaaacgcgagtttgagttt |
115 |
Q |
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| T |
14865902 |
caaaggttggttttaaaggctatggtgttaaaaatgatttcaaagagtattcgaaggaaggtgtttcttttgcaaagtacacaaacgtgagttcgagttt |
14866001 |
T |
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| Q |
116 |
aagtgcttctatggaaatgaaaaagagcacggtgagtggtagtttggtcaaaacatcggttgaaccgggtaagtttttt |
194 |
Q |
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| T |
14866002 |
aagtgcttctgtgaaagtgaacaaaaatgctgcgagtggtagtttggtaaaaaaatgggttgagcctggtaagtttttt |
14866080 |
T |
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