View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_high_17 (Length: 218)
Name: NF14949_high_17
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_high_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 31452067 - 31451847
Alignment:
| Q |
1 |
cttgcaaagactgcttggttttccccgctttatgatgtc-gacgtgggagaagtagtag--ttgcatacaactcttgaatatatgggtggcgaacctttc |
97 |
Q |
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| T |
31452067 |
cttgcaaagactgcttggttttccccactttatgatgtcagacgtgggagaagcagaagagttgcatacaactcttgaatatatgggtggcgaacctttg |
31451968 |
T |
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| Q |
98 |
agtttgataatgttgattttgtcttagattcaaagaaggttgttgattcttttaggacttgcgtagacaataatggtgaatttggttgtattatgcaagc |
197 |
Q |
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| T |
31451967 |
agtttgataatgttgattttgtcttagattcaaagaaggctgttgattcttttaggacttgcgtagacaataatggtgaatttggttgtattatgcaagc |
31451868 |
T |
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| Q |
198 |
ccgtaagtgggtgtttcagat |
218 |
Q |
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| T |
31451867 |
ccgtaagtggttgtttcagat |
31451847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 712159 - 712255
Alignment:
| Q |
95 |
ttcagtttgataatgttgattttgtcttagattcaaagaaggttgttgattcttttaggacttgcgtagacaataatggtgaatttggttgtattat |
191 |
Q |
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| T |
712159 |
ttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattat |
712255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 38246290 - 38246220
Alignment:
| Q |
81 |
tgggtggcgaacctttcagtttgataatgttgattttgtcttagattcaaagaaggttgttgattcttttag |
152 |
Q |
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| T |
38246290 |
tgggtggcaaacctt-cagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttag |
38246220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 46210697 - 46210749
Alignment:
| Q |
103 |
gataatgttgattttgtcttagattcaaagaaggttgttgattcttttaggac |
155 |
Q |
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| T |
46210697 |
gataatgttgattttgttttagattctaagaaggttgtcgattattttaggac |
46210749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 51080901 - 51080851
Alignment:
| Q |
100 |
tttgataatgttgattttgtcttagattcaaagaaggttgttgattctttt |
150 |
Q |
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| T |
51080901 |
tttgataatgttgattttgtcctagattcaaagcaggtcgtagattctttt |
51080851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 12224414 - 12224473
Alignment:
| Q |
95 |
ttcagtttgataatgttgattttgtcttagattcaaagaaggttgttgattcttttaggac |
155 |
Q |
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| T |
12224414 |
ttcagttcaataatgtagattttctgttagattctaagaaggttgtt-attcttttaggac |
12224473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 27527238 - 27527288
Alignment:
| Q |
100 |
tttgataatgttgattttgtcttagattcaaagaaggttgttgattctttt |
150 |
Q |
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| T |
27527238 |
tttgataatgttgattttgtattagattcacaacaggttgtagattctttt |
27527288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 37796487 - 37796537
Alignment:
| Q |
100 |
tttgataatgttgattttgtcttagattcaaagaaggttgttgattctttt |
150 |
Q |
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| T |
37796487 |
tttgataatgttgattttgtcctagattcaaagcagatcgtagattctttt |
37796537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 40287246 - 40287196
Alignment:
| Q |
100 |
tttgataatgttgattttgtcttagattcaaagaaggttgttgattctttt |
150 |
Q |
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| T |
40287246 |
tttgataatgttgattttgtcctagattcaaagcaggtcgtaaattctttt |
40287196 |
T |
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