View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14949_high_2 (Length: 542)
Name: NF14949_high_2
Description: NF14949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14949_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Complemental strand, 30848600 - 30848085
Alignment:
| Q |
18 |
agagacaaccatattagtatatttatgctcatgcatannnnnnnn-gaaactagaacagaattaactttcacctccaaaatatttgtccatggtatatat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30848600 |
agagacaaccatattagtatatttatgctcatgcatatttttttttgaaactagaacagaattaactttcacctccaaaatatttgtccatagtatatat |
30848501 |
T |
|
| Q |
117 |
tattctgtattccttcaagtctaggagataaaagttaataagatataggtgtgtaatgaagctgtcaatattctatgatgataatatattgtcgaagaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30848500 |
tattctgtattccttcaagtctaggagataaaagttaataagatataggtgtgtaatgaagctgtcaatattctatgatgataatatattgtcgaagaat |
30848401 |
T |
|
| Q |
217 |
tactttcaattctttgatagaccatttaatcaaattagttttcacctttcaaatcagtttccattaggaatttgatgcaagcatgcatgtatatataaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30848400 |
tactttcaattctttgatagaccatttaatcaaattagttttcacctttcaaatcagtttccattaggaatttgatgcaagcatgcatgtatatataaat |
30848301 |
T |
|
| Q |
317 |
aaacaagtctataacttctacacacaaatataatcaaggagaacttaagttaagcacaaaattttaaagctatgactaataatgaacaaacattttgggt |
416 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30848300 |
aaataagtctataacttctacacacaaatataatcaaggagaacttaagttaagcacaaaattttaaagctatgactaacaatgaacaaacattttgggt |
30848201 |
T |
|
| Q |
417 |
ggtgtatgagaaatttaagcctcacctttttatggttcttgttcaggtggctcttgtgcttcaatatttcctagtagaggcttcatttaataatggaatg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30848200 |
ggtgtatgagaaatttaagcctcacctttttatggttcttgttcaggtggctcttgtgcttcaatatttcctagtagaggcttcatttaataatggaatg |
30848101 |
T |
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| Q |
517 |
gaccctcatgcctttg |
532 |
Q |
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|||||||||| ||||| |
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| T |
30848100 |
gaccctcatgtctttg |
30848085 |
T |
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